Re: [Fink-users] Error in gcc installation

2011-10-12 Thread Remi Mommsen
Hi Terence, On Oct 12, 2011, at 2:37 AM, Terence Libeiro wrote: Sorry, Here's the relevant information. - $ fink -V | head -n 3 Package manager version: 0.31.2 Distribution version: selfupdate-rsync Sun Oct 9 20:19:12 2011, 10.7, x86_64 Trees: local/main

Re: [Fink-users] Error in gcc installation

2011-10-12 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Thanks for the system information. gcc46 works for me on 10.7. It's quite possible that your third-party gfortran or gcc4.5.3 are interfering with your build. If those are installed in a convenient place like /usr/local, try renaming that

Re: [Fink-users] Octave Atlas

2011-10-12 Thread Don Paul
Sorry been away. Your information request are below. /sw/src/fink.build/atlas-3.9.11-11/LAPACK mkdir -p ../bld/lib ar cr ../bld/lib/libf77blas.a BLAS/SRC/scabs1.o; ar cr ../bld/lib/libptf77blas.a BLAS/SRC/scabs1.o cd .. ln -s /sw/bin/gcc-4 gcc export PATH=`pwd`:$PATH pwd cd bld if [ i386

Re: [Fink-users] More glitches related to octave

2011-10-12 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/3/11 2:22 PM, Dominique Dhumieres wrote: Here is what I get at configure time: configure: defining FFLAGS to be -O3 -ff2c checking whether /sw64/bin/gfortran-fsf-4.6 accepts -ffloat-store... yes setting F77_FLOAT_STORE_FLAG to

Re: [Fink-users] Octave Atlas

2011-10-12 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 We're probably due for a newer upstream version of ATLAS, anyway, since it's more likely to support newer hardware (and Lion). - -- Alexander Hansen, Ph.D. Fink User Liaison http://finkakh.wordpress.com/ On 10/12/11 6:27 AM, Don Paul wrote: Sorry

Re: [Fink-users] Octave Atlas

2011-10-12 Thread Jean-François Mertens
On 12 Oct 2011, at 15:23, Alexander Hansen wrote: We're probably due for a newer upstream version of ATLAS, anyway, since it's more likely to support newer hardware (and Lion). In the unstable series, one is now at 3.9.52. I didn't want to put the unstable series into fink, but now that

Re: [Fink-users] More glitches related to octave

2011-10-12 Thread David Fang
Bonjour, Could you provide the excerpt of config.log that cals DDOT (and maybe SDOT as well, for comparison)? In particular I'm looking for the exact compiler arguments and the diagnostic issued. Fang -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/3/11 2:22 PM, Dominique

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread Frank Schmidt
Hi Alexander, I have manged (with tons of manual operations!) to get all working: - fink selfupdate: see below - apt-get : however it is noted as uninstalled in the fink install list!!! - emacs: newest and with X11 support - gs: newest and with X11 support - gnuplot: newest - cernlib2006 I

[Fink-users] molmol compilation problem

2011-10-12 Thread gary thompson
I have had problems getting fink to install molmol under lion the compilation ended with an error 2 from the linker /usr/bin/ranlib ../../lib/libcmd.a /bin/sleep 2 cd cmdfig; make default gcc -I../../tools/include -I../../sg/include -I../../include -DMAXINT=INT_MAX -I../.. -I/sw/include

Re: [Fink-users] Octave Atlas

2011-10-12 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/12/11 12:44 PM, Jean-François Mertens wrote: On 12 Oct 2011, at 15:23, Alexander Hansen wrote: We're probably due for a newer upstream version of ATLAS, anyway, since it's more likely to support newer hardware (and Lion). In the

Re: [Fink-users] Octave Atlas

2011-10-12 Thread Jean-François Mertens
On 12 Oct 2011, at 19:37, Alexander Hansen wrote: My recollection is that I (I'll take the blame) put 3.9.11 in Fink because 3.8.4 misbuilt on one of the platforms I was using, 3.9.11 didn't and I wasn't aware that 3.9.x was an unstable series until the deed was done Just went to check to

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/12/11 11:57 AM, Frank Schmidt wrote: Hi Alexander, I have manged (with tons of manual operations!) to get all working: - fink selfupdate: see below - apt-get : however it is noted as uninstalled in the fink install list!!! You say

Re: [Fink-users] molmol compilation problem

2011-10-12 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/12/11 12:16 PM, gary thompson wrote: I have had problems getting fink to install molmol under lion the compilation ended with an error 2 from the linker /usr/bin/ranlib ../../lib/libcmd.a /bin/sleep 2 cd cmdfig; make default gcc

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread Peter Dyballa
Am 12.10.2011 um 17:57 schrieb Frank Schmidt: - /usr/local:got moved away Open Source software assumes that this directory tree exists and is filled with useful and fitting software. Open Source software, like that managed by Fink, is written to look by default into that area for

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread Frank Schmidt
Alexander Hansen wrote: pkg-util --file-info /sbin/ldconfig Hi Alexander, It tells me: pkgutil --file-info /sbin/ldconfig 2011-10-12 20:47:00.292 pkgutil[2651:903] PackageKit: *** Missing bundle identifier: /Library/Receipts/IOXWebcamX-1.1.pkg volume: / path: /sbin/ldconfig So not so

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/12/11 2:57 PM, Frank Schmidt wrote: Alexander Hansen wrote: pkg-util --file-info /sbin/ldconfig Hi Alexander, It tells me: pkgutil --file-info /sbin/ldconfig 2011-10-12 20:47:00.292 pkgutil[2651:903] PackageKit: *** Missing bundle

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread frs
Alexander Hansen wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/12/11 2:57 PM, Frank Schmidt wrote: Alexander Hansen wrote: pkg-util --file-info /sbin/ldconfig Hi Alexander, It tells me: pkgutil --file-info /sbin/ldconfig 2011-10-12 20:47:00.292 pkgutil[2651:903]

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread frs
Peter Dyballa wrote: Am 12.10.2011 um 17:57 schrieb Frank Schmidt: - /usr/local:got moved away Open Source software assumes that this directory tree exists and is filled with useful and fitting software. Open Source software, like that managed by Fink, is written to look by default

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/12/11 5:26 PM, frs wrote: You're _not_ going to be able to fix apt other than 1) Find that libc6.5. Does locate libc6 not find anything? And if you do find it, try pkgutil --file-info on that, too. Hi Alexander, Of course I have

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread frs
Alexander Hansen wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/12/11 5:26 PM, frs wrote: You're _not_ going to be able to fix apt other than 1) Find that libc6.5. Does locate libc6 not find anything? And if you do find it, try pkgutil --file-info on that, too. Hi

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread Martin Costabel
On 12/10/11 23:05, Alexander Hansen wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/12/11 2:57 PM, Frank Schmidt wrote: [] pkgutil --file-info /sbin/ldconfig 2011-10-12 20:47:00.292 pkgutil[2651:903] PackageKit: *** Missing bundle identifier: /Library/Receipts/IOXWebcamX-1.1.pkg

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread Martin Costabel
On 12/10/11 23:59, Alexander Hansen wrote: [] Try (I'm assuming it's in /usr): find /usr -name libc6* It might be in /lib or /lib32 or /lib64. -- Martin -- All the data continuously generated in your IT

Re: [Fink-users] build issue with apt was Re: Serious problems with gnuplot and other installations

2011-10-12 Thread Martin Costabel
On 13/10/11 00:21, Martin Costabel wrote: On 12/10/11 23:59, Alexander Hansen wrote: [] Try (I'm assuming it's in /usr): find /usr -name libc6* It might be in /lib or /lib32 or /lib64. Maybe it really doesn't exist. In fact, apt-get's configure script compiles and runs a little program,

[Fink-users] How to capture a build log?

2011-10-12 Thread Bill Waggoner
I thought I'd post a question rather than a problem. Seems like there are a lot of problems and few questions ... ;-} When I do a build of something, like a fink update-all and there IS a problem, where do I find the build log? Or do I need to pipe and tee to capture it? Seems to me that fink

Re: [Fink-users] How to capture a build log?

2011-10-12 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 10/12/11 9:21 PM, Bill Waggoner wrote: I thought I'd post a question rather than a problem. Seems like there are a lot of problems and few questions ... ;-} When I do a build of something, like a fink update-all and there IS a problem, where