Re: [Freesurfer] Segmentation fault (core dumped)

2017-12-18 Thread Douglas N Greve
We need more details. Try looking at this web site surfer.nmr.mgh.harvard.edu/fswiki/BugReporting On 12/18/2017 04:08 PM, Uquillas, Federico D'Oleire wrote: > > Dear FreeSurfer experts, > > > I am unable to run the qcache procedure and was wondering if anybody > could help me find what is

Re: [Freesurfer] Segmentation fault (core dumped)

2017-12-18 Thread Uquillas, Federico D'Oleire
Dear FreeSurfer experts, I am unable to run the qcache procedure and was wondering if anybody could help me find what is going on. I've tried running qcache with several versions of the fsaverage (e.g., fsaverage5, fsaverage6, fsaverage), and have also tried running it in a variety of

[Freesurfer] bbregister issues with ?h.only

2017-12-18 Thread Dorit Kliemann
Hi, I’m having some troubles with using bbregister on hemispherectomy brains (i.e only one hemisphere; data is successfully processed with recon-all dev version - thanks to Bruce). I use bbregister to create a register.dat for the functional (preprocessed with fmriprep and registered -but

[Freesurfer] Longitudinal MRI but different scanner

2017-12-18 Thread Shane Schofield
Hi Freesurfer Team, I try to calculate a within-subject decrease in cortical thickness over 2 years, but the MRI scanner was changed during the project. Is it still possible to do that using the longitudinal stream in Freesurfer?  Thanks. Best

[Freesurfer] running longitudinal TRACULA on a subset of already processed baseline DTI scans?

2017-12-18 Thread Fred Sampedro
Dear TRACULA users, I ran near 100 subjects through the standard (cross-sectional) TRACULA pipeline. Some of them (about 70) have also a longitudinal DTI scan 1-year after the already processed scans. I would like to run longitudinal TRACULA to obtain for those 70 subjects longitudinal changes in