Re: [Freesurfer] Concatenating to run a cortical thickness analysis between 3 groups

2017-12-23 Thread Rosalia Dacosta Aguayo
And finally, I have a dual-task but I do not know anything about the design...the only way to see how has been set is by opening one of the files with i-prime and I do not have it and I have not ever worked with this before... 2017-12-23 22:03 GMT+01:00 Rosalia Dacosta Aguayo

Re: [Freesurfer] Concatenating to run a cortical thickness analysis between 3 groups

2017-12-23 Thread Rosalia Dacosta Aguayo
Another issue is that the T1 images they have provided me have been preprocessed with AFNI, and I have to work with FSL format. So, I have to go back with a function called 3dAFNItoNIFT but I have not never done this beforecould you help me? 2017-12-23 22:01 GMT+01:00 Rosalia Dacosta Aguayo

[Freesurfer] Concatenating to run a cortical thickness analysis between 3 groups

2017-12-23 Thread Rosalia Dacosta Aguayo
Dear FreeSurfer team, I have run recon-all and I have done smoothing in a sample of 24 participants which are divided into 3 groups. Now that I know which smoothing I would like to use, I am a bit lost regarding which of the files generated should I use and how I should concatenate them. It is my

Re: [Freesurfer] CORRECTING DEFECT recon-all giant cyst

2017-12-23 Thread Loeffler, Martin
Dear Bruce, Dear Bram, Thanks a lot for having a look. Unfortunately the left hemisphere is equally important as the right one for our question of interest. With a lot of patience the recon-all has finished and the result looks surprisingly ok. I have additionally re-run it (recon-all