Re: [Freesurfer] Third party dependencies directory not found when building from source

2018-11-03 Thread fsbuild
External Email - Use Caution ​Hello Christian, When a test fails, it should leave behind a log in the subdir for the command, e.g., if the test for ./mri_aparc2aseg fails, then there should be a /mri_aparc2aseg fails,/test_mri_aparc2aseg.log to look at. But you will need a

Re: [Freesurfer] Tracula Question-How the threshold in final merged tracts are defined?

2018-11-03 Thread June Kang
External Email - Use Caution It’s just huge data collected from general population. Some data can have motion artifact, but I couldn’t find any special points in the protocol. http://protocols.humanconnectome.org/HCP/3T/imaging-protocols.html

Re: [Freesurfer] Tracula Question-How the threshold in final merged tracts are defined?

2018-11-03 Thread Yendiki, Anastasia
Hi June - Not in principle, any number of directions > 30 should be compatible. Is there anything else that's different about this data, e.g., SNR, motion, population with more morphological variability, etc.? a.y From: freesurfer-boun...@nmr.mgh.harvard.edu

Re: [Freesurfer] Tracula Question-How the threshold in final merged tracts are defined?

2018-11-03 Thread June Kang
External Email - Use Caution Thanks, Professor Anastasia, I am testing HCP data with 96 directions. There are really frequent failure for right cingulum-angular bundle and right uncinate fasciculus (more than 25%), which not happened with my own 64-direction data with Siemens

Re: [Freesurfer] Stuck in "CORRECTING DEFECT"

2018-11-03 Thread Saturne Fox
External Email - Use Caution I don't want to be part of this mailing list. Thanks in advance. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Qdec table

2018-11-03 Thread Miguel Ángel Rivas Fernández
External Email - Use Caution Hi Freesurfer devs, How can I create a qdec.table.dat file? I tried using a txt file but it doesn´t works. I attached the qdec.table.dat file that I have created. Sorry for this absurd question and thanks in advance. Cheers, -- *Miguel Ángel Rivas