Re: [Freesurfer] Consistent volume increases for some regions when using longitudinal stream

2018-11-11 Thread Martin Reuter
Hi David, there is no need to worry. Whenever we change the pipeline, there will be consistent differences. Since we do not have ground truth thickness it is unclear which method is “more right”. A comparison between cross and long does not make sense here with respect to absolute values. It

Re: [Freesurfer] [External] Re: Nonsensical Vertex Coordinates, please help with interpretation

2018-11-11 Thread Greve, Douglas N.,Ph.D.
It will be in the next release. We may be depricating mris_tessellate in favor of mri_mc anyway. But I've already fixed it in mri_tessellate On 11/9/18 3:31 PM, Bruss, Joel E wrote: External Email - Use Caution Doug- I had time to play around with this, substituted the mri_mc command

Re: [Freesurfer] Functional Connectivity in FreeSurfer

2018-11-11 Thread Greve, Douglas N.,Ph.D.
Yes, see fcseedcor -help On 11/11/18 4:40 AM, Maedeh Khalilian wrote: External Email - Use Caution Dear FreeSurfer experts, I have a general question, if i have a parcellation(an annotation file e.g aparc.annot which is the output of FreeSurfer) is FreeSurfer able to calculate the

[Freesurfer] Functional Connectivity in FreeSurfer

2018-11-11 Thread Maedeh Khalilian
External Email - Use Caution Dear FreeSurfer experts, I have a general question, if i have a parcellation(an annotation file e.g aparc.annot which is the output of FreeSurfer) is FreeSurfer able to calculate the functional connectivity between the regions(parcels) using