Re: [Freesurfer] can´t open an image in Freeview {Disarmed}

External Email - Use Caution Hello Adam, It’s not clear to me that the vtk libs are the issue. Please check that you setup your FREESURFER environment as listed on the freesurfer help/wiki pages,https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall It looks like you would

Re: [Freesurfer] can´t open an image in Freeview

External Email - Use Caution Hello, thanks for your answer. Please see attached the screenshot. I typed "$ which freeview.bin" --> the output: "/usr/local/freesurfer/bin/freeview.bin" I typed "$ ldd `which freeview.bin` | grep not" --> the output: 20 files "libvtk...so.5.6 are

[Freesurfer] Learning fsfast tutorial

External Email - Use Caution Dear experts: I am trying to run preproc-sess -s sess01 -fsd bold -stc up -surface fsaverage lhrh -mni305 -fwhm 5 -per-run But the outcome is ERROR: no run directories found. What could be wrong? If you need more information let me know!

[Freesurfer] Fwd: subcortical volume-based pet analysis

External Email - Use Caution Please, anyone able to answer these questions. Thanks a lot. Sent from my Samsung Galaxy smartphone. Original message From: miracle ozzoude Date: 2019-10-21 10:24 (GMT-05:00) To: Douglas N Greve Subject: subcortical volume-based

[Freesurfer] Getting stats from stats files. rh.w-g.pct. asegstatsdiff

External Email - Use Caution Dear free surfer developers, 1. I processed several items of data. And I have rh.w-g.pct file in my stats folders. How can I get process this file to get table reading file? I tried to use asegstats2table and aparcstats2table but it didn’t

[Freesurfer] segmentation tablet

Hi All, We are looking into replacing our old Wacom segmentation tablet and the two options that I have found so far are the * Wacom Cintiq Pro 32 and * Microsoft Surface Studio 2 Neither of these are linux compatible, which has created some issues in the past. Are there any groups out

[Freesurfer] Mean p-value of uncorrected cluster in Qdec

External Email - Use Caution Dear Freesurfer Developers, I'm running a Qdec analysis in which I'm looking for correlations between cortical thickness and a continuous CSF measurement. I'm interested in a specific area in which a cluster of correlation pops up, but doesn't survive

[Freesurfer] LME model contrast matrix

External Email - Use Caution Hello FreeSurfer Developers, I'm doing the LME tutorial, and I have some questions . 1. Why don’t we need to put the healthy controls in the designed matrix X? 2. What’s the interpretation of the first row of the contrast matrix [1 0 0 0 0], does

Re: [Freesurfer] trac-all error

External Email - Use Caution I followed your given link and ran sudo -E fs_update and came up with the following error just wanted to know is this error related to SIP or is it a some other issue. PILEPSY:subjects eoilepsyosirixadmin$ sudo -E fs_update Build is

Re: [Freesurfer] trac-all error

The error message in your log file ("dyld: Symbol not found...") has been addressed here: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg61247.html From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of nayan wadhwani Sent: Tuesday, October