[Freesurfer] Question about design matrix for surface group analysis

External Email - Use Caution Dear freesurfer users, I have a question about the design matrix.We want to analyse the relationship between the cortical thickness and the neuropsychological test. We have two groups:TLE and extralTLE,one discrete variable:gender,and two

Re: [Freesurfer] recon-all -s SOME_SUBJECT exited with ERRORS

Sure, if you have enough ram and cores > On Nov 7, 2019, at 10:23 PM, Emanuel Alvaredo wrote: > > External Email - Use Caution > > Hi Bruce, same result. > > Question, Is it possible run two recon-all at the same time? > > Emanuel > > >> On Thu, Nov 7, 2019 at 4:41 PM

Re: [Freesurfer] recon-all -s SOME_SUBJECT exited with ERRORS

External Email - Use Caution Hi Bruce, same result. Question, Is it possible run two recon-all at the same time? Emanuel On Thu, Nov 7, 2019 at 4:41 PM Bruce Fischl wrote: > hmmm, does it always happen for this subject? What if you don't use > -parallel? > On Thu, 7 Nov

[Freesurfer] T2 white matter surface refinement

External Email - Use Caution Hi, Looking through the documentation, there are extra options to include a T2 image to refine the pial surface boundary, but I was wondering if FreeSurfer can use a T2 in conjunction with a T1 to help refine the white matter/gray matter boundary?

Re: [Freesurfer] recon-all -s SOME_SUBJECT exited with ERRORS

hmmm, does it always happen for this subject? What if you don't use -parallel? On Thu, 7 Nov 2019, Emanuel Alvaredo wrote: External Email - Use Caution Hi Bruce! Thanks for answer!! * The command line is   recon-all -s SUBJECT_NAME -i

Re: [Freesurfer] Help with "orig.mgz"

External Email - Use Caution Thanks you Bruce El jue., 7 de nov. de 2019 12:18, Bruce Fischl escribió: > Hi Fernando > > it is a volume after resampling to 1mm isotropic, 8 bits/voxel and 256^3 > > cheers > Bruce > On > Thu, 7 Nov 2019, Fernando Castellano wrote: > > > > >

Re: [Freesurfer] Help with "orig.mgz"

Hi Fernando it is a volume after resampling to 1mm isotropic, 8 bits/voxel and 256^3 cheers Bruce On Thu, 7 Nov 2019, Fernando Castellano wrote: External Email - Use Caution good afternoon, I am using freesurfer for my thesis in image technician. I would like to know

[Freesurfer] Help with "orig.mgz"

External Email - Use Caution good afternoon, I am using freesurfer for my thesis in image technician. I would like to know specifically what the orig.mgz file is? I have read that it is step 1 of re-conall. But I don't fully understand thank you, best regards

Re: [Freesurfer] LME model contrast matrix (Diers, Kersten /DZNE)

External Email - Use Caution Hello Guodong, On Mi, 2019-11-06 at 11:28 +0800, Liu Guodong wrote: > External Email - Use Caution > > Hi Kersten, > > Thank you so much for the reply and that helps a lot. > > There are still some questions that I hope you can help