OK, I have it now and am able to verify the problem. It's really strange
-- I don't know why it is behaving like this. It may take me a few days
to dig into.
On 6/18/2020 11:39 AM, Danielian, Laura (NIH/NINDS) [E] wrote:
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Sorry I’m not sure why it didn’t
Great, thanks so much again for your input, Matt/Tim/Bruce.
Yuta
On 6/19/20, 1:37 PM, "Glasser, Matthew" wrote:
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After you convert to GIFTI at fsaverage 164k, you can use these
instructions to get to fs_LR:
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After you convert to GIFTI at fsaverage 164k, you can use these instructions to
get to fs_LR:
In general almost all of our binaries will read or write almost all formats we
support. There are some exceptions to this, but it is generally true
Cheers
Bruce
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Katsumi, Yuta
Sent: Friday, June 19, 2020 9:42
mri_surf2surf will do it, but you are probably better off going directly to
fsaverage rather than downsampling and upsampling
cheers
Bruce
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Tim Schäfer
Sent: Friday, June 19, 2020 9:00 AM
To: Freesurfer
Thanks, Tim and Matt. I made a typo earlier - I meant to say that my overlay
files are already in full fsaverage space with ~164k vertices.
I also thought that mri_convert doesn’t take .gii as output, but the command
that Tim suggested below does indeed seem to work.
Thanks,
Yuta
On
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Is GIFTI a legal output type for mri_convert? I though it only could be
outputted by mris_convert (which does appear to allow .mgh and .gii).
Matt.
On 6/19/20, 8:00 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Tim
Schäfer"
wrote:
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I can't telt you how to get your data from 16k fsaverage to the full 162k
fsaverage mesh, but once you have the full fsaverage version, to convert to
gifti, just do:
mri_convert yourfile.mgh yourfile.func.gii
Best,
Tim
> On June 19, 2020 at
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The appropriate GIFTI extension for that would be .func.gii. What fsaverage#
space is that? Hopefully FreeSurfer provides a tool to convert that to GIFTI
in full resolution fsaverage space and from there we can help you get it to
CIFTI in fs_LR.
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Hi all,
Just following up on this as I've run into the exact same problem. Is there
a different recon-all.makefile that should be used for FS 6/6.0.1 ?
Thanks!
On Fri, Mar 29, 2019 at 9:28 AM Matthieu VANHOUTTE <
matthieuvanhou...@gmail.com> wrote:
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