[Freesurfer] To Run -lGI without Recon-all

2021-01-22 Thread Na, Xiaoxu
External Email - Use Caution Dear FreeSurfer Experts, I happened to have a task to run lGI, however this time, I couldn't run from the very beginning to start with recon-all as usual. I have already prepared ?h.pial from outersurf.vtk using mris_convert. Is this correct? May I

[Freesurfer] Cerebellar Segmentation Definitions

2021-01-22 Thread Horn, Mitchell Jacob
Hi FS Experts, I am planning to use the cerebellar segmentations in the routine recon-all which parcellates the cerebellum into cerebellar-white-matter and cerebellar-gray-matter. I am trying to define the two terms, as it appears that the cerebellar-white-matter label includes much if not all

[Freesurfer] mri_convert error: GetSDCMFileInfo(): dcmGetDWIParams() 7

2021-01-22 Thread Hannah Eichhorn
External Email - Use Caution ​Dear all, I am trying to convert Dicom volumes from a DWI Siemens sequence into nifty format, but I get the following error when I run the mri_convert Test.IMA Test.nii command: ERROR: GetSDCMFileInfo(): dcmGetDWIParams() 7  DICOM