contaminated as an attachement. Try using
this one
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_glmfit-sim
On 09/10/2014 04:21 PM, Eryilmaz, Huseyin Hamdi wrote:
Yes I could save the file from my email into '/homes/8/hhe0/Documents'. Under
'Permissions' tab of this file
On 09/10/2014 04:21 PM, Eryilmaz, Huseyin Hamdi wrote:
Yes I could save the file from my email into '/homes/8/hhe0/Documents'. Under
'Permissions' tab of this file, 'Allow executing file as program' option is
checked.
I can try cd'ing into that folder then run the command as :
mri_glmfit-sim
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Monte Carlo Sim output / sig.masked.mgh
You can just copy it over the old one (but make a backup of it first)
On 09/09/2014 04:21 PM, Eryilmaz, Huseyin Hamdi wrote:
Hi Doug,
Thanks for your reply. I can certainly test it. Could you tell me
from your email or did you cut and paste it into a file and save the file?
On 09/10/2014 04:03 PM, Eryilmaz, Huseyin Hamdi wrote:
Hi Doug,
Running it as you suggested didn't work either. I tried it as follows:
1) /homes/8/hhe0/Documents/mri_glmfit-sim --glmdir ANALYSISPATH --sim mc-z
1
attached a version that should work. Can you
test it for me? Once I know it works I'll check it in to tree.
doug
On 09/03/2014 12:30 PM, Eryilmaz, Huseyin Hamdi wrote:
Dear FS experts,
I have a question about a MC output file. When I run the MC sim
(using mri_glmfit-sim) on the surface
Subject: Re: [Freesurfer] Monte Carlo Sim output / sig.masked.mgh
You can just copy it over the old one (but make a backup of it first)
On 09/09/2014 04:21 PM, Eryilmaz, Huseyin Hamdi wrote:
Hi Doug,
Thanks for your reply. I can certainly test it. Could you tell me how I can
run this new
Dear FS experts,
I have a question about a MC output file. When I run the MC sim (using
mri_glmfit-sim) on the surface, it generates a bunch of files including a
'sig.masked.mgh', which is nice for displaying the significance map limited to
the clusters that survive the MC correction. However,
Dear FS experts,
I have a question about the way contrasts work in an event-related design. I am
wondering if freesurfer is doing some sort of weighing when it compares two
different conditions with incomparable number of trials. For example condition
A is represented by 10 trials in the
.
On Mon, May 5, 2014 at 10:57 AM, Eryilmaz, Huseyin Hamdi
heryil...@partners.orgmailto:heryil...@partners.org wrote:
Dear FS experts,
I have a question about the way contrasts work in an event-related design. I am
wondering if freesurfer is doing some sort of weighing when it compares two
Hi all,
I'm trying to run a simple event-related analysis, in which the conditions are
determined based on subject's performance. It is possible that some of the
predicted conditions do not appear in the paradigm file (mostly because the
subject performs well). In these cases, do I need to
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