Hi Doug, Thanks for your reply. I can certainly test it. Could you tell me how I can run this new 'mri_glmfit-sim' you sent me? The original 'mri_glmfit-sim' that I use is under '/usr/local/freesurfer/stable5_0_0/bin/'
Best, Hamdi ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, September 08, 2014 11:48 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Monte Carlo Sim output / sig.masked.mgh That was an oversight. I've attached a version that should work. Can you test it for me? Once I know it works I'll check it in to tree. doug On 09/03/2014 12:30 PM, Eryilmaz, Huseyin Hamdi wrote: > Dear FS experts, > > I have a question about a MC output file. When I run the MC sim > (using mri_glmfit-sim) on the surface, it generates a bunch of files > including a 'sig.masked.mgh', which is nice for displaying the > significance map limited to the clusters that survive the MC > correction. However, when I run it on the volume, it doesn't generate > this specific file. Does anyone know the reason for that? Is there an > alternative way to display the significance map that show only the > clusters that survive the MC correction? > > Many thanks! > Hamdi > > > -- > > Hamdi Eryilmaz, PhD > > Massachusetts General Hospital > A.A. Martinos Center for Biomedical Imaging > Psychiatric Neuroimaging Division > 149 13th St, Charlestown, MA 02129 > Phone: +1 617 643 7462 > Email:heryil...@partners.org <mailto:heryil...@partners.org> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
