--reg transforms/reg.mni152.1mm.dat --o aparc_aseg_mni152.nii.gz
-roddy
From: Douglas N Greve [gr...@nmr.mgh.harvard.edu]
Sent: Tuesday, November 05, 2013 5:21 PM
To: Roderick McColl; Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] convert (resample
I am obviously using mri_vol2vol incorrectly but I'm stumped.
Goal is to get the $SUBJECTS/fsaverage/mri/aseg.mgz file into the FSL MNI152
space to do some fslmaths.
From looking around it seemed the command to accomplish this is (inside
$SUBJECTS/fsaverage/mri)
mri_vol2vol --targ
left) has the A/P labels the
opposite of the image slice.
Thanks for any advice
-roddy
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Roderick McColl
[roderick.mcc...@utsouthwestern.edu]
Sent: Monday
Hello all,
I have a need to generate LH and RH WM masks for analysis.
I can convert aseg.mgz to aseg.nii but the dims are 256x256x256
and I need to use the FSL MNI format which is 182x218x182.
Is there a recipe for cropping / translating etc to match the aseg.mgz
atlas with the FSL atlases?
Would this new tool also be able to provide a better delineation of both pial
surface and inner table of the skull
(assuming T2 and not FLAIR i.e. hyperintense CSF)) and thus provide the
possibility of computing extra-ventricular
CSF and thus cerebral atrophy?
Some of us would like that I'm sure
Hi Bruce,
Thanks for responding.
We do have T2, but not PD.
Of course the resolution of the T2 is much lower (5mm slices).
-roddy
-Original Message-
From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: Wednesday, September 21, 2011 7:54 AM
To: Roderick McColl; Matti Hamalainen
Hi all,
Trying to get mri_watershed to give me a good inner_skull_surface, which I want
to combine with the pial surface to estimate sulcal CSF, as I don't see any
other way. Unfortunately the data I have tested on all generate unreliable
inner_skull surfaces. Can anyone provide a tip for
