Re: [Freesurfer] Question regarding exporting subcortical segmentation to

2018-02-20 Thread Simon, Joe
Hi Bruce Thanks, mri_binarize works great! Best, Joe Dr. Dipl.-Psych. Joe Simon Universitätsklinikum Heidelberg Klinik für Allgemeine Innere Medizin und Psychosomatik Im Neuenheimer Feld 410 69120 Tel.: ++49(0)6221-56-38667

[Freesurfer] Question regarding exporting subcortical segmentation to .nii ROIs for further analysis in SPM

2018-02-15 Thread Simon, Joe
Dear Experts I just recently started using Freesurfer (implemented as a virtual machine on a Windows machine). After having completed the recon-all procedure, I now want to export the subcortical segementation as .nii images for further use in SPM. My aim is to have a ROI for each segmented