Hi Bruce
Thanks, mri_binarize works great!
Best,
Joe
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Dr. Dipl.-Psych. Joe Simon
Universitätsklinikum Heidelberg
Klinik für Allgemeine Innere Medizin und Psychosomatik
Im Neuenheimer Feld 410
69120
Tel.: ++49(0)6221-56-38667
joe.si...@med.uni-heidelberg.de
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Date: Thu, 15 Feb 2018 12:08:12 -0500 (EST)
From: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Question regarding exporting subcortical
segmentation to .nii ROIs for further analysis in SPM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Message-ID:
<alpine.lrh.2.20.1802151207140.11...@gate.nmr.mgh.harvard.edu>
Content-Type: text/plain; charset="iso-8859-1"
Hi Joe
you can use mri_convert to convert the .mgz volume to nifti if that is
what you want:
mri_convert aseg.mgz aseg.nii.gz
should do the trick. Not sure if that counts as an ROI for SPM. If you want
separate volumes for each structure I think you can use mri_binarize with
the --match flag
cheers
Bruce
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