Re: [Freesurfer] Error when using --mask flag in mri_glmfit

2013-11-14 Thread Suzanne Oosterwijk
AM, Suzanne Oosterwijk wrote: Hello again, I am stuck again in my analysis and I am not sure that my code is right. I want to do the following. With a Monte Carlo simulation I search for significant clusters within a particular ROI in my all conditions vs baseline contrast. Then I want

Re: [Freesurfer] [martinos-tech] parametric modulation

2013-10-31 Thread Suzanne Oosterwijk
On 10/29/2013 10:44 AM, Suzanne Oosterwijk wrote: Hi Doug, Attached is the Xtmp.mat file for the analysis that gets the error. Thanks for your response on the second question. I am not sure what you mean with demeaning, so I guess that I am not doing that :-) I just wanted to make sure

Re: [Freesurfer] [martinos-tech]

2013-09-11 Thread Suzanne Oosterwijk
On Wed, Sep 11, 2013 at 12:08 AM, Douglas N Greve gr...@nmr.mgh.harvard.edu wrote: Hi Suzanne, I'll cc the FS list so others can benefit ... On 09/09/2013 06:02 AM, Suzanne Oosterwijk wrote: Hi Doug, I have two follow-up questions to enhance my own understanding of Freesurfer. I know

Re: [Freesurfer] [martinos-tech] checking talairach registration

2012-05-30 Thread suzanne oosterwijk
...@nmr.mgh.harvard.eduwrote: Hi Suzanne, it does not mean that there is anything wrong with your data. I've seen this before on some data sets. I have a work-around that might work. How many data sets do you have to run? doug On 05/29/2012 02:35 PM, suzanne oosterwijk wrote: Hi, Recently I ran recon1

[Freesurfer] error when running funcroi-table-sess

2011-04-15 Thread suzanne oosterwijk
R_insula_g_mni.bfvsfix_script.dat -sf sessid I have tried many things to see what I am doing wrong, but I can't figure it out. Thanks for any help! Suzanne -- Suzanne Oosterwijk, Ph.D. Postdoctoral Researcher Interdisciplinary Affective Science Lab Department of Psychology Northeastern University 114 Lake Hall

[Freesurfer] recon1: brain missing

2010-11-19 Thread suzanne oosterwijk
by cloning the T1 (aux volume) as is explained in the Freesurfer tutorial. Still, I wonder whether this is the best solution, and why this is happening in the first place. I appreciate any help or feedback on this. Thanks in advance! kind regards, Suzanne Oosterwijk -- Suzanne Oosterwijk