group analyses?
Many thanks!
Pablo
Date: Wed, 8 Jul 2015 17:35:21 -0400
From: gr...@nmr.mgh.harvard.edu
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] 3 Group comparison
There is not a --meas option for mri_glmfit, you need to give it a --y
option explicity, though
is that I would need to run in Qdec
and this is not for more than 2 group analyses?Many thanks!Pablo
Date: Wed, 8 Jul 2015 17:35:21 -0400
From: gr...@nmr.mgh.harvard.edu
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] 3 Group comparison
There is not a --meas option for mri_glmfit
There is not a --meas option for mri_glmfit, you need to give it a --y
option explicity, though it may be trying to read a yfile if you have
one in the FSGD. How did you make g3v0.fsgd? Can you send it? The second
command looks like you are doing the right thing, you just need to tell
Dear FS experts following to my query below I run into further errors. If
anyone could advice it would be great help.Regards,Pablomri_glmfit \ --y
lh.g3v0.thickness.10B.mgh \ --fsgd g3v0.fsgd dods\ --C HC-BD_fam.mtx \
--surf fsaverage lh \ --cortex \ --glmdir lh.g3v0.glmdir? --y
Dear FS experts,I am trying to run a 3 group comparison with FS.I have run
preproc ( script from ENIGMA Cortical protocol) on my first fsgd file.
As I have three groups I have prepared my second fsgd file as g3v0.fsgd and all
my desired contrasts, rather than using QDEC.
I run this second stage
