Re: [Freesurfer] Brainsuite -- FreeSurfer

2013-03-21 Thread Bruce Fischl
wrote: Hi bruce,  I want cortical thickness, total surface area, instrinsec curvature index and folfing index.  VP Date: Wed, 20 Mar 2013 13:09:54 -0400 From: fis...@nmr.mgh.harvard.edu To: pval...@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Brainsuite -- FreeSurfer

Re: [Freesurfer] Brainsuite -- FreeSurfer

2013-03-20 Thread Bruce Fischl
Hi Valtina you can try opening it with freeview if all you want is visualization. If you are trying to produce anatomical stats you will need a lot more than just the pial surface, as mris_anatomical_stats computes many things from an array of inputs (such as the wm.mgz, the aseg.mgz,

Re: [Freesurfer] Brainsuite -- FreeSurfer

2013-03-20 Thread Valtina Pouegue
for get measurements with surfaces ( not generated by Freesurfer)? Thx . VP Date: Wed, 20 Mar 2013 08:38:26 -0400 From: fis...@nmr.mgh.harvard.edu To: pval...@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Brainsuite -- FreeSurfer Hi Valtina you can try opening

Re: [Freesurfer] Brainsuite -- FreeSurfer

2013-03-20 Thread Bruce Fischl
Subject: Re: [Freesurfer] Brainsuite -- FreeSurfer Hi Valtina you can try opening it with freeview if all you want is visualization. If you are trying to produce anatomical stats you will need a lot more than just the pial surface, as mris_anatomical_stats computes many things from an array

Re: [Freesurfer] Brainsuite -- FreeSurfer

2013-03-20 Thread Valtina Pouegue
Hi bruce, I want cortical thickness, total surface area, instrinsec curvature index and folfing index. VP Date: Wed, 20 Mar 2013 13:09:54 -0400 From: fis...@nmr.mgh.harvard.edu To: pval...@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Brainsuite -- FreeSurfer

[Freesurfer] Brainsuite -- FreeSurfer

2013-03-19 Thread Valtina Pouegue
Hi, I've done a segmentation with Brainsuite ( and FreeSurfer) and I would like to get measurements with FreeSurfer. SO, I convert my rile ( readdfs -- write_surf ) from BRainsuite in Matlab to be usable with Freesurfer. Then, I tried to get measurements with the command

Re: [Freesurfer] Brainsuite -- FreeSurfer

2013-03-19 Thread Valtina Pouegue
I could see the created surface in MAtlab ( 'read_surf,) but I could't open the file in Freesurfer with tksurfer VP From: pval...@hotmail.com To: freesurfer@nmr.mgh.harvard.edu Subject: Brainsuite -- FreeSurfer Date: Tue, 19 Mar 2013 22:34:39 -0400 Hi, I've done a segmentation with