Hi Dr. Fischl,
Thank you for clarifying that about norm.mgz for checking segmentations.
Good to know that brain and brainmask wash out low contrast borders.
Cheers,
Reema
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*Reema Jayakar, M.A.*
Doctoral Candidate - Clinical Neuropsychology
Health Resources and Services Administration (HRSA)
Hi Reema
you should visualize it over the norm.mgz. The brainmask and brain will
wash out many low contrast borders (e.g. thalamus, pallidum)
cheers
Bruce
On Mon, 18 Jul
2016, Reema Jayakar wrote:
Hello FS Listserv members,
With regard to checking amygdala segmentation, is it appropriate
Hello FS Listserv members,
With regard to checking amygdala segmentation, is it appropriate to overlay
the aseg.mgz file on the brainmask.mgz? Or should I be overlaying aseg.mgz
on norm.mgz? I am aware of the general rule of thumb that editing the
subcortical segmentations generally is not
