[Freesurfer] Could not find .mat

2013-09-11 Thread Pedro Rosa
Hi, I am finding a warning at recon-all when creating the folders: INFO: could not find /Path/subject.mat file for direction cosine info. INFO: use Analyze 7.5 hdr-hist.orient value: 1, coronal unflipped. INFO: if not valid, please provide the information in /Path/subject.mat file What are the

Re: [Freesurfer] Could not find .mat

2013-09-11 Thread Bruce Fischl
no, you'll need to figure out which series to give an a file from, but it will figure out the other files in the same series. Also, please cc the list so that others can answer Bruce On Wed, 11 Sep 2013, Pedro Rosa wrote: Hi, Thanks for your help. Is freesurfer able to select T1-w dicoms