Re: [Freesurfer] Mri_mask producing only zeros

2019-10-24 Thread Greve, Douglas N.,Ph.D.
Can you send the full terminal output? On 10/14/19 12:01 AM, Sims, Sara A (Campus) wrote: > > External Email - Use Caution > > Freesurfers, > > I am trying to use mri_mask using surface overlays. I made a label > into a volume and then into a surface with 1s inside the label and 0s >

Re: [Freesurfer] Mri_mask producing only zeros

2019-10-18 Thread Greve, Douglas N.,Ph.D.
Can you send the full command line (the one below does not make sense)? And send the terminal output On 10/14/19 11:53 AM, Sims, Sara A (Campus) wrote: External Email - Use Caution Freesurfers, I am trying to use mri_mask using surface overlays. I made a label into a volume and then

Re: [Freesurfer] Mri_mask producing only zeros

2019-10-14 Thread Sims, Sara A (Campus)
External Email - Use Caution Here is how I made the label into a surface overlay: mri_label2vol --label $label/lh.7Networks_6.label --temp /data/project/vislab/a/HCP_diff_Sara/fsaverage/mri/orig.mgz --identity --o $vols/lh.7Networks_6.nii mri_vol2surf --src

Re: [Freesurfer] Mri_mask producing only zeros

2019-10-14 Thread Bruce Fischl
Hi Sara we will need to know the actual commands and the screen output from them that you ran cheers Bruce On Mon, 14 Oct 2019, Sims, Sara A (Campus) wrote: External Email - Use Caution Freesurfers, I am trying to use mri_mask using surface overlays. I made a label into

[Freesurfer] Mri_mask producing only zeros

2019-10-14 Thread Sims, Sara A (Campus)
External Email - Use Caution Freesurfers, I am trying to use mri_mask using surface overlays. I made a label into a volume and then into a surface with 1s inside the label and 0s outside the label. I want to make a connectivity map surface overlay with values only within my