Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-27 Thread Jens Offenbach
@nmr.mgh.harvard.edu[freesurfer@nmr.mgh.harvard.edu] Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch hi jens,   if you search the archives, there is a post that lists the minimal set of files needed for running recon-all.   i used a tool called cde to create

[Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Jens Offenbach
We are currently working on a solution that brings FreeSurfer in the cloud. Unfortunately, we are facing a lot of problems. Hopefully, someone can help me: I want to run FreeSurfer on Ubuntu 14.04 or 14.10. What package is required to download (CentOS 4 x86_64 (64b))? Does it work anyway on the

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Krieger, Donald N.
@nmr.mgh.harvard.edu Subject: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0- patch We are currently working on a solution that brings FreeSurfer in the cloud. Unfortunately, we are facing a lot of problems. Hopefully, someone can help me: I want to run FreeSurfer on Ubuntu

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Bruce Fischl
Hi Jens you could estimate it, but it might not be exactly right. There's no way to know how long it will take to converge as it depends on the details of the anatomy. If the current output is not verbose enough for you, you can turn on more output by: setenv DIAG 0x04040 if you run some

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Jens Offenbach
. We do not have a medical background. Regards, Jens Gesendet: Mittwoch, 19. November 2014 um 13:14 Uhr Von: Krieger, Donald N. krieg...@upmc.edu An: 'Freesurfer support list' freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch Dear

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Satrajit Ghosh
...@upmc.edu An: 'Freesurfer support list' freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch Dear Jens, I can offer just a bit of information and I also have a question. We are using Fedora 11.0 on an x86_64 box and both the Centos 4

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Jens Offenbach
Ghosh sa...@mit.edu An: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch hi jens,   if you search the archives, there is a post that lists the minimal set of files needed for running recon-all.   i used

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Satrajit Ghosh
An: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch hi jens, if you search the archives, there is a post that lists the minimal set of files needed for running recon-all. i used a tool called cde to create