Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-27 Thread Jens Offenbach
. Could you please try to find the post in the archives and provide me the link? Thank you very much!     Gesendet: Mittwoch, 19. November 2014 um 15:23 Uhr Von: "Satrajit Ghosh" An: "Freesurfer support list" Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packagi

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Satrajit Ghosh
ajit Ghosh" > An: "Freesurfer support list" > Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and > 5.3.0-patch > > hi jens, > > if you search the archives, there is a post that lists the minimal set of > files needed for running reco

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Jens Offenbach
rajit Ghosh" An: "Freesurfer support list" Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch hi jens,   if you search the archives, there is a post that lists the minimal set of files needed for running recon-all.   i used a tool called cd

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Satrajit Ghosh
Jens > > Gesendet: Mittwoch, 19. November 2014 um 13:14 Uhr > Von: "Krieger, Donald N." > An: "'Freesurfer support list'" > Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and > 5.3.0-patch > Dear Jens, > > I can offer

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Jens Offenbach
pipeline itself. We do not have a medical background. Regards, Jens Gesendet: Mittwoch, 19. November 2014 um 13:14 Uhr Von: "Krieger, Donald N." An: "'Freesurfer support list'" Betreff: Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Bruce Fischl
Hi Jens you could estimate it, but it might not be exactly right. There's no way to know how long it will take to converge as it depends on the details of the anatomy. If the current output is not verbose enough for you, you can turn on more output by: setenv DIAG 0x04040 if you run some re

Re: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Krieger, Donald N.
ember 19, 2014 5:47 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: [Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0- > patch > > We are currently working on a solution that brings FreeSurfer in the cloud. > Unfortunately, we are facing a lot of problems. Hopeful

[Freesurfer] Pipeline/Step Progress Monitoring, Packaging and 5.3.0-patch

2014-11-19 Thread Jens Offenbach
We are currently working on a solution that brings FreeSurfer in the cloud. Unfortunately, we are facing a lot of problems. Hopefully, someone can help me: I want to run FreeSurfer on Ubuntu 14.04 or 14.10. What package is required to download (CentOS 4 x86_64 (64b))? Does it work anyway on the