Re: [Freesurfer] Plotting QDEC results

2018-08-12 Thread Douglas Greve
On 8/11/18 12:02 PM, Avi Gharehgazlou wrote: External Email - Use Caution Thank you for your reply. I chose the 1.3 threshold based on LGI papers in the ASD literature, but I will use 2.0. 2 is still too low. You'd need at least 3. 1. By permutation do you mean FDR correction?

Re: [Freesurfer] Plotting QDEC results

2018-08-11 Thread Avi Gharehgazlou
External Email - Use Caution Thank you for your reply. I chose the 1.3 threshold based on LGI papers in the ASD literature, but I will use 2.0. 1. By permutation do you mean FDR correction? 2. If I use monte carlo at 2.0 (0.01 p-value) would this be okay for LGI, or do you still

Re: [Freesurfer] Plotting QDEC results

2018-08-10 Thread Douglas Greve
Each row is a subject and each column is a cluster. BTW, a threshold of 1.3 is way too low for lGI. If you want to use a threshold that low, you should use permutation instead of monte carlo (in general, permutation is better, but certainly for lGI). On 8/9/18 1:39 PM, Avi Gharehgazlou wrote:

[Freesurfer] Plotting QDEC results

2018-08-09 Thread Avi Gharehgazlou
External Email - Use Caution Hi experts, I looked at association between LGI and a behavioural scale on QDEC. after the analysis, to plot the significant clusters/ blobs, I wanted to export LGI values for each subject from each significant blob and based on instructions in