I have 4 files: F1. anatomical image 1 F2. anatomical image 2 F3. T-map coregistered with anat img 2 F4. xfm file that coregisters anat img 2 to anat img 1.
If I load all of these in scuba and apply the xfm inside scuba to the data from F2 and F3, everything aligns up nicely with the data from F1. However, if I run mri_convert as: mri_convert F2 --apply_transform F4 newF2 mri_convert F3 --apply_transform F4 newF3 and then run scuba, newF2 is in alignment with F1 but newF3 is still in alignment with F3. Any suggestions would be most helpful. Thanks, Satra _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
