Hi Cody
yes, it could be due to poor contrast. The watershed isn't the issue
though, it is mri_segment and mris_make_surfaces. You can try changing
the wm/gm limits, or upload the subject and we will take a look
cheers
Bruce
On Tue, 24
Apr 2018, Barlow, Cody wrote:
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Hi FreeSurfer Experts,
After running my subject through FS6 autorecon3 and QCing the data, I noticed
that FS6 is outlining white matter as grey matter and then bumping out the grey
matter segmentation accordingly. I have tried using different
