Re: [Freesurfer] Subcortical volume calculation from aparc+aseg.mgz?

2014-05-13 Thread Douglas N Greve
The partial volume correction is done based on the intensity and label of the surrounding voxels. By using aparc+aseg you change the label of the surrounding structures and it changes the PV correction. Use aseg.mgz and not aparc+aseg doug On 05/09/2014 05:27 AM, Schreiber, Stefanie wrote:

[Freesurfer] Subcortical volume calculation from aparc+aseg.mgz?

2014-05-09 Thread Schreiber, Stefanie
Dear all, For the evaluation of the subcortical volumes we executed ‘mri_segstats’ on ‘aseg.mgz’ and for comparison on ‘aparc+aseg.mgz’ in a number of individuals. Apparently the volume of subcortical structures, like the hippocampus, is calculated as the same values if calculated (without