Subject: Re: [Freesurfer] Thalamus ROI
Hi Sara
sure, you can look up the thalamus labels in FreeSurferColorLUT.txt (10
and 49 for lh and rh), then use either mri_extract_labels or mri_binarize
to pull our ROIs.
cheers
Bruce
On Mon, 7 Aug 2017, sarai...@alumni.ubc.ca wrote:
> Hi Freesurfer t
Hi Sara
sure, you can look up the thalamus labels in FreeSurferColorLUT.txt (10
and 49 for lh and rh), then use either mri_extract_labels or mri_binarize
to pull our ROIs.
cheers
Bruce
On Mon, 7 Aug 2017, sarai...@alumni.ubc.ca wrote:
> Hi Freesurfer team,
> Is it possible to extract Thalamus
Hi Freesurfer team,
Is it possible to extract Thalamus as an ROI from aseg.mgz to be used for
tractography in FSL.
If so, what command I have to use to extract it.
Can I use the LUT table to extract thalamus?
Thanks,
Sara
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