[Freesurfer] editing and converting

Hi Freesurfers, I am new to this software and i am trying to learn how to use it. I have two questions: 1) if I do recon-all on a group of 20 subject, and I am primarily interested in a few regions (In my case - amygdala, insula and anterior cingulate cortex), do I have to edit all the datasets

Re: [Freesurfer] editing and converting

Hi Jenny 1) yes, they are usually fine, but you *always* should look at the regions you are hoping to make biological statements about. 2) mri_convert -rl rawavg.mgz -rt nearest aseg.mgz aseg.rawavg.nii Wold convert the aseg. Not that they are already in the original RAS space, just a