Re: [Freesurfer] freeview command line options

2019-09-23 Thread Ruopeng Wang
Hi Eli, The bug has been fixed. You can follow these steps to update freeview to the latest dev build: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview Best, Ruopeng On 9/20/19 4:14 PM, Rockers, Elijah D. wrote: External Email - Use Caution Hello, it's possible I f

Re: [Freesurfer] freeview command line options

2019-09-22 Thread Tim Schäfer
External Email - Use Caution Dear Eli, could you add the command line you used and the FreeSurfer version (e.g., output of `cat ${FREESURFER_HOME}/VERSION`)? Thanks, Tim > On September 20, 2019 at 10:14 PM "Rockers, Elijah D." > wrote: > > > External Email - Use Ca

Re: [Freesurfer] freeview command line options

2019-09-20 Thread Ruopeng Wang
Hi Eli, I can confirm this is a bug. We'll fix it very soon. Best, Ruopeng On 9/20/19 4:14 PM, Rockers, Elijah D. wrote: External Email - Use Caution Hello, it's possible I found a bug in freeview: I'm using the overlay_color option with freeview. Specifically I am trying to us

[Freesurfer] freeview command line options

2019-09-20 Thread Rockers, Elijah D.
External Email - Use Caution Hello, it's possible I found a bug in freeview: I'm using the overlay_color option with freeview. Specifically I am trying to use both the "truncate" and "inverse" options in a command line call to freeview for a pipeline I am building. The documenta

Re: [Freesurfer] freeview command line options

2017-01-29 Thread peng
Thanks for the advice, bruce. On Fri, Jan 27, 2017 at 4:17 PM, Bruce Fischl wrote: > probably you should just smooth the volume and save it as a new volume > before running freeview > > cheers > Bruce > On Fri, 27 Jan 2017, Ruopeng Wang wrote: > >> Hi Peng, >> >> No, there is no command-line opti

Re: [Freesurfer] freeview command line options

2017-01-29 Thread peng
Dear Ruopeng, Thank you for the information. best Peng On Fri, Jan 27, 2017 at 4:10 PM, Ruopeng Wang wrote: > Hi Peng, > > No, there is no command-line option for that. I will add it in future update. > > Best, > Ruopeng > >> On Jan 27, 2017, at 9:49 AM, peng wrote: >> >> Dear Freesurfer ex

Re: [Freesurfer] freeview command line options

2017-01-27 Thread Bruce Fischl
probably you should just smooth the volume and save it as a new volume before running freeview cheers Bruce On Fri, 27 Jan 2017, Ruopeng Wang wrote: > Hi Peng, > > No, there is no command-line option for that. I will add it in future update. > > Best, > Ruopeng > >> On Jan 27, 2017, at 9:49 AM,

Re: [Freesurfer] freeview command line options

2017-01-27 Thread Ruopeng Wang
Hi Peng, No, there is no command-line option for that. I will add it in future update. Best, Ruopeng > On Jan 27, 2017, at 9:49 AM, peng wrote: > > Dear Freesurfer experts, > > When I use Freeview GUI to show overlays on a surface, I can click on > the button "Configure", and then check the b

[Freesurfer] freeview command line options

2017-01-27 Thread peng
Dear Freesurfer experts, When I use Freeview GUI to show overlays on a surface, I can click on the button "Configure", and then check the box "Enable" in the smooth section (upper right of the pop-out window), to smooth it. Is there any options to do similar stuff in the command line of freeview?