Re: [Freesurfer] glmfit with aseg table: view surface overlay

2021-04-18 Thread Douglas N. Greve
eesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] glmfit with aseg table: view surface overlay Are you trying to correct the table? You can't do that with mri_gtlmfit-sim. That looks for clusters, which does not make sense when you are using table data. There are a couple of ways you can do

Re: [Freesurfer] glmfit with aseg table: view surface overlay

2021-04-16 Thread Griem, Julia
logy & Neuroscience King's College London 16 De Crespigny Park, Camberwell London, SE5 8AB From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: 16 April 2021 16:11 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] glmfit with aseg table: view surface overlay

Re: [Freesurfer] glmfit with aseg table: view surface overlay

2021-04-16 Thread Douglas N. Greve
vard.edu *Subject:* Re: [Freesurfer] glmfit with aseg table: view surface overlay The input is a table, so the output is a table (the sig.mgh file will just have the number of values that are in the table; this is not a "volume" you can look at in FV). Look in the sig.table.dat file for t

Re: [Freesurfer] glmfit with aseg table: view surface overlay

2021-04-15 Thread Griem, Julia
ondon 16 De Crespigny Park, Camberwell London, SE5 8AB From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Douglas N. Greve Sent: 15 April 2021 15:14 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] glmfit with aseg table: view surface overlay The input is a table, so th

Re: [Freesurfer] glmfit with aseg table: view surface overlay

2021-04-15 Thread Douglas N. Greve
The input is a table, so the output is a table (the sig.mgh file will just have the number of values that are in the table; this is not a "volume" you can look at in FV). Look in the sig.table.dat file for the sigs. On 4/13/2021 8:41 AM, Griem, Julia wrote: External Email - Use

[Freesurfer] glmfit with aseg table: view surface overlay

2021-04-13 Thread Griem, Julia
External Email - Use Caution Dear Freesurfer team, I am comparing subcortical volumes (aseg table) in 2 groups with no other variables. Based on the GLM lecture slides from the course I attended, I ran the following glmfit command: mri_glmfit --table aseg_table.txt --fsgd