Re: [Freesurfer] missing ribbon.mgz

2018-07-13 Thread Aaron Tanenbaum
att. >> >> From: on behalf of Aaron >> Tanenbaum >> Reply-To: Freesurfer support list >> Date: Friday, July 13, 2018 at 5:24 PM >> To: Freesurfer >> Subject: [Freesurfer] missing ribbon.mgz >> >> External Email - Use Caution >> >

Re: [Freesurfer] missing ribbon.mgz

2018-07-13 Thread Aaron Tanenbaum
xist? > > Peace, > > Matt. > > From: on behalf of Aaron > Tanenbaum > Reply-To: Freesurfer support list > Date: Friday, July 13, 2018 at 5:24 PM > To: Freesurfer > Subject: [Freesurfer] missing ribbon.mgz > > External Email - Use Caution > > I am a

Re: [Freesurfer] missing ribbon.mgz

2018-07-13 Thread Glasser, Matthew
support list mailto:Freesurfer@nmr.mgh.harvard.edu>> Date: Friday, July 13, 2018 at 5:24 PM To: Freesurfer mailto:Freesurfer@nmr.mgh.harvard.edu>> Subject: [Freesurfer] missing ribbon.mgz External Email - Use Caution I am a bit puzzled. I am running freesurfer 5.3 HCP on ubuntu 14.04.

[Freesurfer] missing ribbon.mgz

2018-07-13 Thread Aaron Tanenbaum
External Email - Use Caution I am a bit puzzled. I am running freesurfer 5.3 HCP on ubuntu 14.04. I am getting an error, see below I am using the command recon-all -s BOLD-52_v1 -mprage -autorecon2 This has happened before. What did I do wrong. #@# ASeg Stats Fri Jul 13

[Freesurfer] Missing ribbon.mgz file

2013-07-02 Thread ye tian
Dear freesurfers, Recon-all -s subject -autorecon2 returns the following error messages *mri_segstats will not calculate Supratentorial due to missing ribbon.mgz file* mghRead(Path_to_subject/mri/*ribbon.mgz, -1)*: could not open file. Prior to autorecon2, I did recon-all -s subject

Re: [Freesurfer] Missing ribbon.mgz file

2013-07-02 Thread Douglas N Greve
Hi Ye, one of the programs expects that recon-all will be run all the way through instead of in parts. You will need to download a new version of mri_segstats from ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.centos6

Re: [Freesurfer] Missing ribbon.mgz file

2013-07-02 Thread ye tian
Dear Douglas, Thank you very much! Sincerely, Ye On Tue, Jul 2, 2013 at 10:36 AM, Douglas N Greve gr...@nmr.mgh.harvard.eduwrote: Hi Ye, one of the programs expects that recon-all will be run all the way through instead of in parts. You will need to download a new version of mri_segstats