Re: [Freesurfer] mri_glmfit-sim error correcting for MC for LGI analysis

2019-04-18 Thread amirhossein manzouri
External Email - Use Caution Hi Freesurfer, I am also experiencing the same problem and everything regarding FREESURFER path looks ok just getting error that says: Reading source surface /storage/affective/ume2/confined/Amir/FS/fsaverage/surf/rh.white MRISread(): could not open

Re: [Freesurfer] mri_glmfit-sim error correcting for MC for LGI analysis

2018-12-06 Thread Greve, Douglas N.,Ph.D.
On 11/27/2018 06:46 AM, C.P.E. Rollins wrote: > External Email - Use Caution > Hi Douglas, > > Thanks a lot for your answers. > > 1) For the permutations, would you recommend using this for > controlling for MC in cortical thickness analyses too? Yes > Why is it recommended to use permutation

Re: [Freesurfer] mri_glmfit-sim error correcting for MC for LGI analysis

2018-11-27 Thread C.P.E. Rollins
External Email - Use Caution Hi Douglas, Thanks a lot for your answers. 1) For the permutations, would you recommend using this for controlling for MC in cortical thickness analyses too? Why is it recommended to use permutation simulation as opposed to Z Monte Carlo simulation

Re: [Freesurfer] mri_glmfit-sim error correcting for MC for LGI analysis

2018-11-26 Thread Greve, Douglas N.,Ph.D.
On 11/23/2018 11:26 AM, C.P.E. Rollins wrote: > External Email - Use Caution > Dear Freesurfer Developers, > I have a 2-part question: > 1) I was advised to use permutation to control for multiple > comparisons in an LGI analysis, would you mind elaborating how to do > this in command line

[Freesurfer] mri_glmfit-sim error correcting for MC for LGI analysis

2018-11-23 Thread C.P.E. Rollins
External Email - Use Caution Dear Freesurfer Developers, I have a 2-part question: 1) I was advised to use permutation to control for multiple comparisons in an LGI analysis, would you mind elaborating how to do this in command line (in terms of command and parameters)? 2) In