Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

Dear FS gurus, I just want to give some feedback on an error message that has bedeviled some of us for the last few months even after running fs_update and turning off SIP. I have been getting this error when I ran mri_coreg or mris_convert: dyld: lazy symbol binding failed: Symbol

Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

Hello, Sorry for the late reply. I did try re-running it and it did work this time! Thank you. Daniela On Mon, Mar 6, 2017 at 12:15 AM, wrote: > Hello Daniela, > > Ive been looking into this error, and although I am unable to replicate it > on my Mac, I do have

Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

Hello Daniela, Ive been looking into this error, and although I am unable to replicate it on my Mac, I do have what might be a potential solution. Could you please source freesurfer, then run the following command. $> sudo -E fs_update Then retry the subject with the parallel flag. Please let

Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

I could be wrong, but I dont think it has anything to do with the installation location. Can you upload your subject folder so I can take a look? https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange On 03/03/2017 09:11 AM, Daniela wrote: > I second the problem found in this thread: >

Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

build, because we can't roll any of our newly ordered machines > back to Yosemite anymore. > > > Sincerely, > Mira > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Z K > <zkauf...@nmr.mgh.harvard.edu

Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

rvard.edu> Sent: Monday, February 20, 2017 9:11 PM To: Freesurfer support list Subject: Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding Hello Jared, Would it be possible to tar up the subject directory and upload it to our server s

Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

t; Providence, RI 02906 > > Email: jared_sale...@brown.edu > Phone: 401-421-9440 > Fax: 401-453-3578 > > > >> On Feb 17, 2017, at 12:00 PM, freesurfer-requ...@nmr.mgh.harvard.edu wrote: >> >> Message: 30 >> Date: Fri, 17 Feb 2017 10:21:03 -0500 >

Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

error on MacOS 10.12.13 Sierra: > during mris_smooth. dyld: lazy symbol binding > To: freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> > Message-ID: <c4e0438e-3a66-2e2e-038c-887ea392a...@nmr.mgh.harvard.edu > <mailto:c4e0438e-3a66-2e2e-038c-887ea392a...@nmr

Re: [Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

Hello Jared, Curious... Can you try processing this particular subject with a single thread and see what happens? If the problem persists let me know and I will take a look at the subject. -Zeke On 02/17/2017 08:28 AM, Jared Saletin wrote: > Hi Freesurfer gurus: > > I recently installed 6.0.0

[Freesurfer] recon_all error on MacOS 10.12.13 Sierra: during mris_smooth. dyld: lazy symbol binding

Hi Freesurfer gurus: I recently installed 6.0.0 on MacOS 10.12 and recon-all is exiting with an error in mris_smooth. It looks like a library issue. A prior post had the same issue and indicated uninstalling the whole distribution and re-installing 6.0.0 fresh (as opposed to installing over