folders.
So the recon-all running normally.
Thanks Doug.
All the best.
2013-12-19
Rujing Zha
发件人：Douglas N Greve gr...@nmr.mgh.harvard.edu
发送时间：2013-12-19 04:48
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人：Rujing Zhacharujing...@163.com
抄送
：*Douglas N Greve gr...@nmr.mgh.harvard.edu
*发送时间：*2013-12-18 00:51
*主题：*Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from
the command-line ERROR
*收件人：*Rujing Zhacharujing...@163.com
*抄送：*freesurferfreesurfer@nmr.mgh.harvard.edu
Is that all it says? Can you send the log file?
On 12/16
] unpacksdcmdir: specifies unpacking rules from
the command-line ERROR
*收件人：*freesurferfreesurfer@nmr.mgh.harvard.edu
*抄送：*
If you passed -run 015 it should have generated a 015 folder and not a
013 folder. The only thing I can think may have gone wrong is that it
expected 15 instead of 015.
doug
Hi Rujing
why does the input volume have multiple frames? Is it a multi-echo
dataset?
cheers
Bruce
On Sat, 14 Dec 2013, Rujing Zha wrote:
Hi Bruce,
It generated a 013 subfolder in after running this code unpacksdcmdir
-src ../data/liujunhao -targ ../work/liujunhao -fsfast -run 015 3danat
Rujing Zha
发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu
发送时间：2013-12-16 21:54
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人：Rujing Zhacharujing...@163.com
抄送：freesurferfreesurfer@nmr.mgh.harvard.edu
Hi Rujing
why does the input volume have multiple
but why are you giving recon-all the path to run 013 instead of 015? I
don't know the fsfast file structure, but your scan.info says that 013 is
an EPI fun and 015 is the mprage
On Sat,
14 Dec 2013, Rujing Zha wrote:
Hi Bruce,
It generated a 013 subfolder in after running this code
was in the 15th line of the scan.info.
Thanks Bruce.
All the best.
2013-12-16
Rujing Zha
发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu
发送时间：2013-12-16 22:12
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人：Rujing Zhacharujing...@163.com
抄送
Zha
发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu
发送时间：2013-12-16 22:12
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人：Rujing Zhacharujing...@163.com
抄送：freesurferfreesurfer
：2013-12-16 22:24
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人：Rujing Zhacharujing...@163.com
抄送：freesurferfreesurfer@nmr.mgh.harvard.edu
sorry, I don't know that code very well. Doug is probably the right one to
help you
Bruce
On Mon, 16 Dec
：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
?? ? command-line ERROR
收件人：Rujing Zhacharujing...@163.com
抄送：freesurferfreesurfer@nmr.mgh.harvard.edu
but why are you giving recon-all the path to run 013 instead of 015? I
?? ? don't know the fsfast file structure
发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu
发送时间：2013-12-16 22:24
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人：Rujing Zhacharujing...@163.com
抄送：freesurferfreesurfer@nmr.mgh.harvard.edu
sorry, I
发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu
发送时间：2013-12-16 22:37
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人：Rujing Zhacharujing...@163.com
抄送：freesurferfreesurfer@nmr.mgh.harvard.edu
no, I didn't get it
On Mon, 16
发件人：Bruce Fischl fis...@nmr.mgh.harvard.edu
发送时间：2013-12-16 22:12
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人：Rujing Zhacharujing...@163.com
抄送：freesurferfreesurfer@nmr.mgh.harvard.edu
but why are you giving recon-all
...@nmr.mgh.harvard.edu
发送时间：2013-12-17 02:56
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人：freesurferfreesurfer@nmr.mgh.harvard.edu
抄送：
If you passed -run 015 it should have generated a 015 folder and not a
013 folder. The only thing I can think may have gone wrong
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