Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-21 Thread Douglas N. Greve
no special flags. 7.2 will update all of the files, it should preserve all your edits though On 6/21/2022 7:21 AM, Aaron Tanenbaum wrote: External Email - Use Caution Are there special flags. There are differences between autorecon1 for both pipeline. Does 7.2 update some of the

Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-21 Thread Aaron Tanenbaum
External Email - Use Caution Are there special flags. There are differences between autorecon1 for both pipeline. Does 7.2 update some of the files like for instance the T1.mgz do to differences in the normalizations. On Sun, Jun 19, 2022, 3:55 PM Douglas N. Greve wrote: > You

Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-19 Thread Douglas N. Greve
You should be able to run 7.2 on top of the 5.3 and at will take all your edits (make a copy of your 5.3 data first:) On 6/14/2022 5:26 PM, Aaron Tanenbaum wrote: External Email - Use Caution Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans to do.  I see

Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-15 Thread Bouchra Guelib
External Email - Use Caution Actually, I didn't try this idea and also I don't know what's the difference between brain mask from previous versions. Le mar. 14 juin 2022 à 22:39, Aaron Tanenbaum a écrit : > External Email - Use Caution > > Great. glad I was of some

Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-14 Thread Aaron Tanenbaum
External Email - Use Caution Great. glad I was of some help. I still need my questions answered. On Tue, Jun 14, 2022 at 4:33 PM Bouchra Guelib < bouchra.gue...@univ-constantine2.dz> wrote: > External Email - Use Caution > > The problem is solved, I just changed the

Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-14 Thread Bouchra Guelib
External Email - Use Caution The problem is solved, I just changed the freesurfer version , thnx for your help Le mar. 14 juin 2022 à 22:27, Aaron Tanenbaum a écrit : > External Email - Use Caution > > Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of

[Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-14 Thread Aaron Tanenbaum
External Email - Use Caution Our lab is moving from FreeSurfer 5.3 to 7.2. We have thousands of scans to do. I see that you can give freesurfer a brainmask. I was thinking of giving freesurfer a brainmask from the previous from 5.3 to 7.1. Is this a wise idea? Do you have any