@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] cannot allocate memory issue
It looks like there is too huge a topology error for it to continue:
CORRECTING DEFECT 23 (vertices=143258, convex hull=19937)
Excessive topologic defect encountered: could not allocate -729782272
edges for retessellation
From: Allison Stevens Player [astev...@nmr.mgh.harvard.edu]
Sent: Monday, May 14, 2012 1:02 PM
To: Borzello, Mia
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] cannot allocate memory issue
It looks like there is too huge a topology error
1:28 PM
To: Borzello, Mia
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] cannot allocate memory issue
You can do:
tkmedit subjid filled.mgz rh.orig.nofix -aux-surface lh.orig.nofix
When you downloaded FreeSurfer, you would have also received the subject
bert who is a good example
: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] cannot allocate memory issue
It says that it couldn't open rh.orig.nofix and lh.orig.nofix. On the popup
image, it doesn't look like the skull is present, but it does look like the
cerebellum
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Borzello, Mia
Sent: Monday, May 14, 2012 1:37 PM
To: Allison Stevens Player
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] cannot allocate memory issue
It says that it couldn't open rh.orig.nofix and lh.orig.nofix
: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] cannot allocate memory issue
You can do:
tkmedit subjid filled.mgz rh.orig.nofix -aux-surface lh.orig.nofix
When you downloaded FreeSurfer, you would have also received the subject
bert who is a good example to compare to. He will likely
...@nmr.mgh.harvard.edu]
Sent: Monday, May 14, 2012 3:16 PM
To: Borzello, Mia
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] cannot allocate memory issue
Hi Mia,
You may want to check your talairach to make sure that looks okay. If
that's not causing the problem, you can edit the wm.mgz to remove
To: Borzello, Mia
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] cannot allocate memory issue
You can do:
tkmedit subjid filled.mgz rh.orig.nofix -aux-surface lh.orig.nofix
When you downloaded FreeSurfer, you would have also received the subject
bert who is a good example to compare
14, 2012 3:16 PM
To: Borzello, Mia
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] cannot allocate memory issue
Hi Mia,
You may want to check your talairach to make sure that looks okay. If
that's not causing the problem, you can edit the wm.mgz to remove the
cerebellum
, 2012 3:32 PM
To: Borzello, Mia
Cc: Allison Stevens Player; freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] cannot allocate memory issue
Hi Mia
can you clarify what you mean by a different set of dicoms? Did you
acquire more than 1 T1-weighted structural on this subject? And can
so that's most likely the problem?
From: Bruce Fischl [fis...@nmr.mgh.harvard.edu]
Sent: Monday, May 14, 2012 3:46 PM
To: Borzello, Mia
Cc: Allison Stevens Player; freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] cannot allocate memory issue
: Monday, May 14, 2012 3:32 PM
To: Borzello, Mia
Cc: Allison Stevens Player; freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] cannot allocate memory issue
Hi Mia
can you clarify what you mean by a different set of dicoms? Did you
acquire more than 1 T1-weighted structural on this subject
: Bruce Fischl [fis...@nmr.mgh.harvard.edu]
Sent: Monday, May 14, 2012 3:46 PM
To: Borzello, Mia
Cc: Allison Stevens Player; freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] cannot allocate memory issue
actually I wanted one from tkmedit. Can you tell us something about the
acquisition
From: Bruce Fischl [fis...@nmr.mgh.harvard.edu]
Sent: Monday, May 14, 2012 3:46 PM
To: Borzello, Mia
Cc: Allison Stevens Player; freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] cannot allocate memory issue
actually I wanted one from tkmedit. Can you tell us something about
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