External Email - Use Caution
Hello Varun,
The Windows file system, i.e., NTFS, does not support soft links. So you
cannot set SUBJECTS_DIR to storage mounted from your Windows machine that has
been formatted by Windows OS, and then run something in the linux VM that is
going to
External Email - Use Caution
recon-all died immediately after trying to create a symlink. Might be
because it is on a VBox. Rob, can you help figure this out?
On 6/21/2023 11:55 AM, Varun Chandran wrote:
External Email - Use Caution
p.s. I am wondering whether this
External Email - Use Caution
p.s. I am wondering whether this specific issue arises while working with
freesurfer using Linux based Virtual Machine?
On Wed, Jun 21, 2023 at 4:47 PM Varun Chandran
wrote:
> Hi Yujing
>
> Thank you very much for your quick reply. Yes, I used a
External Email - Use Caution
Hi Varun,
I’m not sure what issue that you have been running into. Can you send your
recon-all.log?
In general, you need to
1. set environment variable SUBJECTS_DIR to some directory that you have write
permission
2. pass full path to T1 image to
