Re: [Freesurfer] Problem with visualising hippocampal subfield segmentation

2012-04-05 Thread Ed Gronenschild
Hi Koen, Thanks, this solved the problem. Ed On 4 Apr 2012, at 19:21, Koen Van Leemput wrote: Hi Ed, It seems that the 5.1.0 release for the Mac was composed two days after the one for Linux, and during exactly those two days one of us made a change to the file

Re: [Freesurfer] Problem with visualising hippocampal subfield segmentation

2012-04-04 Thread Ed Gronenschild
Hi Koen, As already mentioned, I'm using v5.1.0, Mac Intel Leopard version. The voxel values of posterior_left_CA2-3.mgz and posterior_right_CA2-3.mgz are between 0 and 255, if that is what you mean by results. By the way: I always get the 8 lines with invalid drawable messages from freeview. Ed

Re: [Freesurfer] Problem with visualising hippocampal subfield segmentation

2012-04-04 Thread Koen Van Leemput
OK, I see why this is not working. We've been changing some name conventions in our internal FreeSurfer repository after the public release of version 5.1, and somehow you managed to get an incompletely updated version. It appears from ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0

Re: [Freesurfer] Problem with visualising hippocampal subfield segmentation

2012-04-04 Thread Ed Gronenschild
I have downloaded the file freesurfer-Darwin-leopard-i686-stable-pub-v51.0..dmg, date 26/05/2011. Ed On 4 Apr 2012, at 13:09, Koen Van Leemput wrote: OK, I see why this is not working. We've been changing some name conventions in our internal FreeSurfer repository after the public release of

Re: [Freesurfer] Problem with visualising hippocampal subfield segmentation

2012-04-04 Thread Koen Van Leemput
Hi Ed, It seems that the 5.1.0 release for the Mac was composed two days after the one for Linux, and during exactly those two days one of us made a change to the file $FREESURFER_HOME/FreeSurferColorLUT.txt. To correct this issue, please make a back-up copy of your FreeSurferColorLUT.txt file,

Re: [Freesurfer] Problem with visualising hippocampal subfield segmentation

2012-04-03 Thread Koen Van Leemput
Hi Ed, What version of the FreeSurfer build are you using? Also, could you please let me know what the result is of ls posterior_left_CA2*? Thanks, Koen On Tue, Mar 27, 2012 at 8:29 AM, Ed Gronenschild ed.gronensch...@np.unimaas.nl wrote: Hi, I followed the instructions to visualize the