Re: [Freesurfer] Pial surface volume

2017-09-16 Thread Bruce Fischl
sorry, can you clarify what your question is? On Sat, 16 Sep 2017, Fereshte wrote: Dear FreeSurfer developers  I couldn't find the mentioned mris_volume in the commands. Shall i use mri_vol2surf or something?  Looking forward to hearing from you!  On Tue, Sep 5, 2017 at 9:46 AM Fereshte

Re: [Freesurfer] Pial surface volume

2017-09-16 Thread Fereshte
Well i did ask if it was possible to obtain the volume of Pial surface and here's the response; "sure, mris_volume will give you the interior volume of any closed surface using the divergence formula. Note that this is *not* the volume of the ribbon but rather the volume of the entire interior"

Re: [Freesurfer] Pial surface volume

2017-09-16 Thread Douglas Greve
Is it not in $FREESURFER_HOME/bin ? What version are you using? On 9/16/17 12:05 PM, Fereshte wrote: Well i did ask if it was possible to obtain the volume of Pial surface and here's the response; "sure, mris_volume will give you the interior volume of any closed surface using the divergence

Re: [Freesurfer] Hippocampal subfield segmentation error

2017-09-16 Thread Iglesias Gonzalez, Eugenio
Dear MMAA, That looks like a runtime error. Did you have any problems with version 6.0? Cheers, /Eugenio -- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ From: