[Freesurfer] ?????? Hippocampal Subfields Atlas

2019-09-25 Thread ZZY
External Email - Use Caution Dear Doug?? I know the fsfast but have never used it before, and I just preprocessed my resting-state fMRI data by using SPM toolbox. Next, we want to analyze the functional connecitvity between the hippocampal subregions. Best, Zhiyong

[Freesurfer] Hippocampal Subfields Atlas

2019-09-25 Thread ZZY
External Email - Use Caution Dear Doug?? I have a group of multimode MRI data, including functional MRI, T1WI and diffusion MRI. We want to analyze the functional and structual connectivity between the hippocampal subregions. Now, we have obtained individual-level atlas of

[Freesurfer] Unable to access previous email archives

2019-09-25 Thread Mageshwar Selvakumar
External Email - Use Caution Dear Freesurfer community, I have not been able to access the mail archives this week. It redirects to Martinos Center and asks me for a NMR Login and password. Is this the same login details we used to subscribe to the mailing list? I tried but my

Re: [Freesurfer] issue with lesions

2019-09-25 Thread Greve, Douglas N.,Ph.D.
If they are aligned in tkregisterfv, then you can use use --regheader instead of --reg something.lta On 9/24/19 7:10 PM, Sam W wrote: > > External Email - Use Caution > > Hi Doug, > anat is a T1w image and is well aligned with orig when I run the > tkregisterfv command. > But I suspect

Re: [Freesurfer] Unable to access previous email archives

2019-09-25 Thread Greve, Douglas N.,Ph.D.
I did not have any problems. Were you on this link? https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/ On 9/25/19 10:10 AM, Mageshwar Selvakumar wrote: > > External Email - Use Caution > > Dear Freesurfer community, > > I have not been able to access the mail archives this week.

Re: [Freesurfer] Hippocampal Subfields Atlas

2019-09-25 Thread Greve, Douglas N.,Ph.D.
Are you using fsfast? On 9/25/19 7:00 AM, ZZY wrote: > > ?0?2?0?2?0?2?0?2?0?2?0?2?0?2?0?2External Email - Use Caution > > Dear ?0?2Doug?? > > ?0?2 ?0?2 ?0?2I have a group of multimode MRI data, including functional MRI, > T1WI and diffusion MRI. We want to analyze the functional and > structual

Re: [Freesurfer] Freesurfer vs. CAT12

2019-09-25 Thread Greve, Douglas N.,Ph.D.
Hi Omar, we have played around with CAT12 a little bit and are finding systematic differences (eg, CAT thickness is thicker than FS). In the one study we tried, the group analysis was quite different. We have not had time to really dig into it yet. best doug On 9/20/19 3:14 PM, Maximo, Jose

[Freesurfer] Color scale in TkSurfer and Freeview

2019-09-25 Thread Zhi Li
External Email - Use Caution Dear Freesurfer experts, May I ask how could I customize the color scale in TkSufer? The default heat scale is blue-red. Could I change it to other colors, such as green-yellow or blue-white-red (like gradient)? Now I know how to customize the color

Re: [Freesurfer] Corpus Callosum area

2019-09-25 Thread Greve, Douglas N.,Ph.D.
We don't output or have tools to compute it. I can tell you how you can get a number for it, but it would not be with a validated method. Let me know. On 9/24/2019 5:37 AM, Fernanda Hansen P. de Moraes wrote: External Email - Use Caution Dear Freesurfer experts, how can I extract the