Re: [Freesurfer] List of vertices in defined region

2023-03-05 Thread Fischl, Bruce R.,PHD
Hi Sarah You can use read_annotation.m to load an annotation into matlab, which should give you the info you are after. Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Sarah Lavelle Sent: Sunday, March 5, 2023 12:09 PM To: freesurfer@nmr.mgh.harvard.edu Subject:

[Freesurfer] List of vertices in defined region

2023-03-05 Thread Sarah Lavelle
External Email - Use Caution Hi there, I want to get a list of all vertex numbers within a defined region. For example, to see what vertices are in the superior frontal lobe using the DKAtlas. Would you have any suggestions? I am currently using Matlab to analyse the cortical

[Freesurfer] Segmentation fault (core dumped)

2023-03-05 Thread Tracy Riggins
External Email - Use Caution Greetings FS experts: We are trying to run recon-all -s -qcache on a handful of brains processed in freesurfer v5.1.0. (it's an old dataset...5.1 makes the most sense for our purpose.) The error is below: [image: image.png]