Hi Bruce, I found out what was wrong. If any of you had the same problem, it could be due to this. Vertices for freesurfer are in millimeters, and I had them in meters.
Thanks for your help and good luck with the course. Arvind On 22 Jul 2005, Bruce Fischl wrote: > Hi Arvind, > > it's the middle of the FSL/FreeSurfer course, so we're all really busy. > Hopefully we'll get to it next week. > > Bruce > On Thu, 21 Jul 2005, Arvind Gururajan > wrote: > > > Hi, > > > > Could anyone please tell me what could be wrong? What more information do I > > need to provide? Your help will be really appreciated. > > > > Arvind Gururajan > > > > On 20 Jul 2005, Arvind Gururajan wrote: > >> Hi Bruce, > >> > >> I had a single file with both hemisphere data points. Was able to make a > >> crude separation into two hemisphere. Probably couldn't have messed up > >> here, I used a different software to visualize them, and it was fairly > >> clean separation. > >> > >> I used the following command to convert from .asc to .orig. > >> > >> mris_convert > >> /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.curv.asc > >> /share_data/server/arvind/freesurfer/subjects/ZM/surf/lh.orig > >> > >> .xdebug_tksurfer for the subject is empty, here it is anyways. > >> > >> Thanks for your help. > >> > >> Arvind > >> > >> > >> On 14 Jul 2005, Bruce Fischl wrote: > >>> Hi Arvind, > >>> > >>> you need to give us more info, and the .xdebug_tksurfer files. > >>> > >>> Bruce > >>> On Thu, 14 > >>> Jul 2005, Arvind Gururajan wrote: > >>> > >>>> Hi, > >>>> > >>>> I have trouble viewing .orig files in Tksurfer. I used mris_convert > > to > >>>> generate .orig files from .ascii( with number of vertices and > > triangles > >> for > >>>> each hemisphere). Any quick thoughts on what could be wrong ? No > > error > >>>> messages. > >>>> > >>>> Help would be appreciated. > >>>> > >>>> Arvind Gururajan > >>>> > >>>> > >>>> _______________________________________________ > >>>> Freesurfer mailing list > >>>> Freesurfer@nmr.mgh.harvard.edu > >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>>> > >>>> > >>>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > >> > >> > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
