Hi,
I was trying out a code to generate optimal sequences using optseq2. The code
is as follows:
optseq2 --ntp 300 --tr 2 \
--psdwin 0 12 1 \
--ev one 1 20 \
--ev two 1 15 \
--ev three 1 15 \
--ev four 1 50 \
--ev five 1 50 \
you should not interpret each line as a time point. Each line is a
stimulus presentation. You have specified that the presentations are 1
sec long and can occur at an time divisible by 1 sec (--psdwin 0 12 1),
so you could have as many as 600 lines. BTW, I would probably go longer
than 12 sec
Hi Doug,
Thank you very much for the reply. The question that I have now is, how do I
distribute my time points between the events and also specify a fixed number of
time points for the NULL cases?
Thanks and Regards,
Usha
you should not interpret each line as a time point. Each line is a
Hi Dough,
On Monday 17 May 2010 22:29:28 Douglas N Greve wrote:
So is the problem that cortex is 2000 every where including your label
Yes this is the case, but I have already found a way around to get to where I
wanted. mri_label2voi --help has the example which helped me.
Thanks anyway,
Hi, all,
I have a question regarding how to get the deformation map in surface-based
registration.
I am wanting to use mris_register to align two surfaces. Can I get the
deformation maps
describing the vertex-to-vertex correspondence? How can I get it?
Thanks a lot.
Best,
Xiaojing
Hi Xiaojing,
the deformation map is the difference between the ?h.sphere.reg and the
?h.sphere. I guess you would want to represent them as arcs of great
circles.
cheers,
Bruce
On Tue, 18 May 2010, Xiaojing Long wrote:
Hi, all,
I have a question regarding how to get the deformation map in
Hi, Bruce,
Thanks a lot for replying me.
Do I have to create the deformation file by myself? Or can it be generated
from
some option set in mris_register?
Thanks again.
Best,
Xiaojing
2010/5/18 Bruce Fischl fis...@nmr.mgh.harvard.edu
Hi Xiaojing,
the deformation map is the difference
I don't understand your question. Can you elaborate?
Tadimeti, Usha wrote:
Hi Doug,
Thank you very much for the reply. The question that I have now is, how do I
distribute my time points between the events and also specify a fixed number
of time points for the NULL cases?
Thanks and
I don't think we have anything to create the deformation field explicitly,
unless Thomas Yeo (ccd) does.
cheers
Bruce
On
Tue, 18 May 2010, Xiaojing Long wrote:
Hi, Bruce,
Thanks a lot for replying me.
Do I have to create the deformation file by myself? Or can it be generated
from
some
I don't have it either.
Regards,
Thomas
On May 18, 2010, at 4:51 PM, Bruce Fischl wrote:
I don't think we have anything to create the deformation field
explicitly, unless Thomas Yeo (ccd) does.
cheers
Bruce
On Tue, 18 May 2010, Xiaojing Long wrote:
Hi, Bruce,
Thanks a lot for
Hi:
I downloaded a dataset image from OASIS (OAS1_0068_MR1)... I reprocessed
with Freesurfer v4.5.0 (recon-all -legacy command) But, there are
differences between the old and new aseg.stats file... for example, the ICV:
1433107.255467 (old), 1328556.632821 (new)... left Hippocampus: 4130.0
It is possible to do this sort of thing in Caret (using the FreeSurfer
registration); one can create a deformation map between sphere and
sphere.reg. What do you need the deformation map for?
Peace,
Matt.
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
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