Re: [Freesurfer] Correlation coeffecient

2014-07-13 Thread MCLAREN, Donald
Lars, Yes. You could use that equation. Here are some more conversions: http://www.soph.uab.edu/Statgenetics/People/MBeasley/Courses/EffectSizeConversion.pdf Best Regards, Donald McLaren = D.G. McLaren, Ph.D. Research Fellow, Department of Neurology, Massachusetts General

Re: [Freesurfer] retinotopic mapping using selxavg3-sess

2014-07-13 Thread Alan Lee
Hi Doug, When I run the following: /usr/lib/fsl/5.0/bin/bet2 it gives me the following error: bet2: error while loading shared libraries: libfslvtkio.so: cannot open shared object file: No such file or directory When I run fsl it says fsl: Command not found. However, the command fslview

Re: [Freesurfer] Understanding Hippocampal volume stats

2014-07-13 Thread Marcos Martins da Silva
Hi, Zia 1- The name Right-Hippocampus is misleading you. The hippocampal subfields segmentation is atlas based. And the atlas was generated from expert manual segmentation. The problem is that the most posterior part of hippocampal tail is too small to allow a precise segmentation. So they know it

Re: [Freesurfer] Hippocampal Subsectioning

2014-07-13 Thread Marcos Martins da Silva
Hi, Joshua Just answered this to Mohammad Zia in a previous message and I guess it is useful to you. 1- The name Right-Hippocampus is misleading you. The hippocampal subfields segmentation is atlas based. And the atlas was generated from expert manual segmentation. The problem is that the most