[Freesurfer] Freeview error

External Email - Use Caution Dear Experts I have been encountered a problem opening Freeview window in Mac Terminal. Could you please help me troubleshooting this problem? Here is the screenshot. Thanks in advance. -- Kind regards Md. Mamun Al-Amin

Re: [Freesurfer] Freesurfer 6.0 - Tracula - Segmentation fault

Thank you. Can you also send screenshots of your original DWIs, if they don't look like this? From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Matthew Grecsek Sent: Friday, September 21, 2018 10:27:37 AM To: Freesurfer support list Subject: Re:

[Freesurfer] mri_glmfit-sim error

External Email - Use Caution Hello Freesurfer Developpers, I'm trying to use mri_glmfit-sim to make clusterwise corrections but am running into the following error: - XFM matrix (RAS2RAS) ---

[Freesurfer] calculated cortical thickness from segmented binary gray matter and white matter images from other software

External Email - Use Caution Dear experts, Is there any way I can calculate the cortical thickness based on gray matter and white matter binary images from other software. I mean I have a image in native space with white matter voxels labelled as 10 and gray matter voxels

Re: [Freesurfer] Ynt: Ynt: linux data and macbook

Hi Emre we have worked hard to reduce the differences in the results across platform, but in general you should analyze all your subjects on the same hardware/software. You can certainly run higher level analysis on the mac if all your subjects have been run through recon-all on a linux box,

[Freesurfer] Best way to update Freeview

Dear Experts, Updating Freeview came up as a potential solution for a problem in a different thread, so I posting this as a separate issue, since the question stands on its own. I am currently using “Freeview Version 2.0” – Build Jan 19 2017. This version came with the Freesurfer 6.0 package,

Re: [Freesurfer] Dead Links to 3rd Party Libraries

Hello Joseph, Try this link for the 3rd party libs (to use with the cmake build) http://surfer.nmr.mgh.harvard.edu/pub/data/fspackages/prebuilt/ - rob On Sep 20, 2018, at 8:39 PM, Moon, Joseph Young-Joon mailto:moo...@llnl.gov>> wrote: External Email - Use Caution Hi, I’m trying

[Freesurfer] make_average_subject error

External Email - Use Caution Hello Freesurfer Developpers, I'm attempting to make a study specific template using all of my subjects as input using the make_average_subject command, but am receiving the following error: Building hash of lh white Building hash of lh pial

Re: [Freesurfer] matlab MEXFile error in thalamic nuclei segmentation script

External Email - Use Caution Hi Carme, This has to do with the CentOS version. Please try the version compiled on CentOS6 (that should fix the problem). Cheers, /Eugenio -- Juan Eugenio Iglesias ERC Senior Research Fellow Centre for Medical Image Computing (CMIC) University

Re: [Freesurfer] matlab MEXFile error in thalamic nuclei segmentation script

External Email - Use Caution Hi Carme, In case of MEX file errors, I think you need to have the compilers (Fortran and C). Check what suits your version the most. Cheers, Fereshte On Fri, Sep 21, 2018 at 12:33 PM Carme Uribe Codesal wrote: > External Email - Use

[Freesurfer] Ynt: Ynt: linux data and macbook

External Email - Use Caution Different in the workplace with the computer at home. linux at work, macbook at home. Is it a problem if I work two? macbook recon -all -all =(?) linux recon - all -all Gönderen Outlook

[Freesurfer] matlab MEXFile error in thalamic nuclei segmentation script

External Email - Use Caution Dear FreeSurfer users, I am trying to run the Thalamic nuclei and the hippocampal/amygdala segmentation scripts but there is an error with the matlab license. The error message is: LD_LIBRARY_PATH is

[Freesurfer] GLM

External Email - Use Caution Dear experts, I am using FS 6.0 for some studies. I want to calculate the thickness difference between males and females in two group, Young group and Old group. In DODS model: The first step: creat a FSDG file: GroupDescriptorFile 2 Title

Re: [Freesurfer] trac-all using nifti

External Email - Use Caution Hi Anastasia, Sure, I will try that. Thanks for the advice! Regards, Heidi On Fri, Sep 21, 2018 at 4:49 PM Yendiki, Anastasia wrote: > You need to specify one more option, like -prep, etc. Please follow the > instructions on the tutorial and, if

Re: [Freesurfer] trac-all using nifti

You need to specify one more option, like -prep, etc. Please follow the instructions on the tutorial and, if the problem persists, send the exact command line that you ran and the full text of the output that you got. On Sep 21, 2018 2:42 AM, Heidi Emmanuel Foo wrote: External Email -

Re: [Freesurfer] trac-all using nifti

External Email - Use Caution Hi Anastasia, I think I ran trac-all -c config.txt. Regards, Heidi On Thu, Sep 20, 2018 at 10:18 PM Yendiki, Anastasia < ayend...@mgh.harvard.edu> wrote: > What is the trac-all command line that you run? > -- > *From:*