[Freesurfer] mri_segstats

2019-04-09 Thread Nasiriavanaki, Zahra
Dear Freesurferers I was trying to do a connectivity analysis using subnuclei of Amygdala. I had an Amygdala segmentation file (reg.lh.HBT.mgz for letf Amygdala) and I tried to use that in mri_segstats to extract the timeseries and then use it as a seed in my analysis. However when I looked at

Re: [Freesurfer] Creating anatomical ROI's

2019-04-09 Thread Daniel Callow
External Email - Use Caution Thank you Doug! *Daniel Callow* *PhD Student, Neuroscience and Cognitive Science* Exercise for Brain Health Lab University of Maryland, College Park *ddcc2...@gmail.com * 443-254-6298 On Tue, Apr 9, 2019 at 11:03 AM Greve, Douglas N.,Ph.D. < dgr...@mg

[Freesurfer] Post-doctoral Research Position at the Yale Alzheimer's Disease Research Unit

2019-04-09 Thread Adam Mecca
External Email - Use Caution The Yale University Alzheimer’s Disease Research Unit and the Yale PET Center has an opening for a highly qualified and motivated individual at the post-doctoral level to work on research involving the development of analysis techniques integrating huma

Re: [Freesurfer] Paired Analysis Questions

2019-04-09 Thread Greve, Douglas N.,Ph.D.
Do you have two groups? If so, then specify Class PA Class C Instead of Class Main. Then in the input lines use, eg, Inputsub118PA Inputsub131C On 4/8/2019 9:35 PM, brain health wrote: External Email - Use Caution Dear Dr. Greve: Thank you so much for your time and he

Re: [Freesurfer] Creating anatomical ROI's

2019-04-09 Thread Greve, Douglas N.,Ph.D.
Try using mri_binarize with the hipsubfields as input and using --match 231 232 This will create a mask of all voxels that match the numbers On 4/8/2019 8:49 PM, Daniel Callow wrote: External Email - Use Caution Hello, I am trying to create ROI volumes from the hippocampal subfields I g

Re: [Freesurfer] Problem with calculating significant clusters' values

2019-04-09 Thread Greve, Douglas N.,Ph.D.
On 4/9/2019 9:45 AM, Georgina Angelopoulou wrote: External Email - Use Caution Hello FreeSurfer Developers, I have compared two groups in area, volume and thickness (using mri_glmfit and mri_glmfit-sim) and I want to extract the total value from each significant cluster so that I can

[Freesurfer] Problem with calculating significant clusters' values

2019-04-09 Thread Georgina Angelopoulou
External Email - Use Caution Hello FreeSurfer Developers, I have compared two groups in area, volume and thickness (using mri_glmfit and mri_glmfit-sim) and I want to extract the total value from each significant cluster so that I can run analysis with behavioural variables in S