[Freesurfer] Fwd: Error in Analyze: Couldn't open ... fwhm10.fsaverage.mgz

External Email - Use Caution Dear FreeSurfer experts: I am processing in qdec 3 subjects with the GUI and I have this terminal output. Error in Analyze: Couldn't open /Applications/freesurfer/subjects/IXI_22_Guys_T1/surf/lh.thickness.fwhm10.fsaverage.mgz or .mgh file. lh-Avg-

Re: [Freesurfer] label to asc

External Email - Use Caution Thanks Bruce, that's helpful! I take it that it's not possible to create a surface file simply using the information in the label file then? The reason I'm confused is that "mris_convert lh.white lh.white.asc" will convert a surface file to asc. The con

Re: [Freesurfer] Error running recon-all

Hi Vin are you sure you have space on that disk? Can you run: mri_info /home/Downloads/reorient/test.nii mri_info /media/results/mri/orig/001.mgz ls -l /media/results/mri/orig/001.mgz /media/results/mri/rawavg.mgz and send us the results? cheers Bruce On Thu, 25 Jul 2019, vin rasa wrote:

[Freesurfer] convert stl to .surf.gii

External Email - Use Caution Hello, I am attempting to convert a .stl file to a .surf.gii. I tried using mris_convert but that did not work. This is the command. mris_convert cb4mesh-dec250k_fixnMf6_Euler-448_scale001.stl cb4mesh-dec250k_fixnMf6_Euler-448_scale001.surf.gii This

Re: [Freesurfer] Error running recon-all

External Email - Use Caution Please also find recon-all.log file. Thanks! On Thu, Jul 25, 2019 at 6:50 AM vin rasa wrote: > Dear Freesurfer experts, > Greetings! > > > In the first minute of recon-all, we are getting following error: > > mghRead(/media/results/mri/rawavg.mgz):

[Freesurfer] DPABISurf V1.1 Is Released

External Email - Use Caution Dear Colleagues, We are pleased to announce the release of DPABISurf V1.1! DPABISurf is a surface-based resting-state fMRI data analysis toolbox evolved from DPABI/DPARSF, as easy-to-use as DPABI/DPARSF. DPABISurf is based on fMRIPprep 1.4.1 (Esteban