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Dear FreeSurfer team,
I have processed my data through the longitudinal stream of FreeSurfer6
using the -hires flag. I would like to apply the patch to fix the global
metrics, but seem to run into an error when supplying the longitudinal
subject
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Oh, I'm sorry for the careless mistake. It works!
Thank you for your patience.
Iglesias Gonzalez, Juan E.
于2020年8月20日周四 下午10:44写道：
> OK I think I got it: you wrote hippoSF instead of hippoSf (lower case f)
>
> Cheers,
>
> /E
>
>
>
>
>
> Juan
Hi Barbara,
I think you are asking to run FastSurfer and source FS7.1 binaries instead of
the recommended 6.0. for the surface processing part.
This may work, but it is not recommended. We only tested FastSurfer in
combination with 6.0. as described in the paper. So if you use 7.1 you are on
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Dear FreeSurfer experts,
After running the longitudinal pipeline with QDEC, I needed beta-values of the
associations between my main continuous variable and the significant cortical
cluster, as well as of all the nuisance factors/categorical
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Perfect, thanks so much for the quick response!
Mark
Mark Wagshul, PhD
Associate Professor
Gruss Magnetic Resonance Research Center
Albert Einstein College of Medicine
Bronx, NY 10461
Ph: 718-430-4011
FAX: 718-430-3399
Email:
Hi Barbara
We run a *ton* of tests on thousands of subjects from different scanners and
different kinds of pathology before we do a major release. This hasn't been
done yet with fastsurfer as it is a huge amount of work
Cheers
Bruce
-Original Message-
From:
OK I think I got it: you wrote hippoSF instead of hippoSf (lower case f)
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: on behalf of Yang Molly
Reply-To: Freesurfer support list
Date: Thursday, August 20, 2020
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Dear all,
I noticed FastSurfer also seems to run with a 7.1.0 FS version.
Or is there any reason not to do this?
Thank you,
Kind wishes,
Barbara
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Freesurfer mailing list
On 8/19/2020 10:24 PM, Mark Wagshul wrote:
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Dear Freesurfer experts,
I have what seems like a simple problem, and I’m sure there is a
method for doing this, hoping someone can give me some guidance.
We have results from an LME model run on surface
First, determine which voxel (col, row, slice) you want your delta to be
in, then specify this with --delta-crsf col row slice 0
On 8/19/2020 9:57 PM, Mauricio Watanabe Ribeiro wrote:
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Actually I believe that I should just use the mri_vol2surf using the
Why did you not load cache.th13.abs.sig.cluster.neg.mgh?
On 8/19/2020 1:17 PM, Avi Gharehgazlou wrote:
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Hi, following my concern that all my significant clusters (that have
survived monte carlo p<0.05 correction in this case) don't appear as
their
Are the values you want not in the aseg.stats file? You can do it from
individual ROIs, but you have to use all of them, not just the ones you
list
On 8/19/2020 11:27 AM, Plotkin, Micah wrote:
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Dear Freesurfer Experts,
I want to generate global
I think we made some changes in v7.1.1 that might fix the error. Can you
try that? I suspect the underlying problem is that there are not any
clusters that are surviving
On 8/19/2020 11:11 AM, 정현우 wrote:
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I'm using version 6.0.0.
2020년 8월 20일 (목) 오전
That's fine with us
doug
On 8/18/2020 1:37 AM, Zhengjia Wang wrote:
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Hi, everyone,
I'm developing a package that reads in files generated by FreeSurfer
in some situations. The code was initially designed to publish in
GPL-3. However, I noticed in your
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