[Freesurfer] How to remove segments from white and left cerebral white matter and get cerebral white matters without these segments

get the cerebral white matter without the segments corresponding to the labels 4, 43, 28, and 60. I am looking forward to hearing from you. Best regards,Ammar Shujaa Addin ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] How to extract individual structures after recon-all

and then save each one, so I can use them for machine learning later. Looking forward to hearing from you. Best regards,Ammar Shujaa Addin___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] How to join certain segmentation with T1.mgz and save them in one file with nifti format

External Email - Use Caution Hello FreeSurfur Developers, I have used binary mask and got the segmentations: right and left-hypocampus.mgz. I just want to know how to join these segmentations with T1.mgz so that I can get one file containing T1 image with the two segmentations.

Re: [Freesurfer] How to join certain segmentation with T1.mgz and save them in one file with nifti format

want to use this file (hypocampus+brainmask.gmz) in another software. Best regardsAmmar On Wednesday, August 4, 2021, 11:54:48 PM GMT+9, Douglas N. Greve wrote: I don't understand what you mean by "join". Can you elaborate? On 8/4/2021 1:16 AM, Ammar Sh

Re: [Freesurfer] How to join certain segmentation with T1.mgz and save them in one file with nifti format

of the brainmask, you can run mri_binarize --i brainmask.mgz --min 0.5 --o brainmask.bin.mgz Then run mergeseg --src brainmask.bin.mgz --merge both.hippo.mgz --o bm+hippo.mgz On 8/4/2021 12:21 PM, Ammar Shujaa wrote: External Email - Use Caution Hello Freesufer developers