External Email - Use Caution Hello everyone,
I am using Freesurfer 6.0 on linux cluster. We are analyzing CBF data (ASL derived) coupled with fMRI task in longitudinal design. The fMRI data was analyzed in FS-FAST (with paired-diff) and now we want to repeat the group analyses on CBF maps. So far I registered the ASL data to individual anatomy and successfully transformed into fsaverage surface space (and smoothed afterwards). The data looks good so far - I can overlay it on inflated fsaverage surface. My question is: how to stack the data for further mri_glmfit processing? I suppose I should use mris_preproc for this purpose, but I am at loss with which flags are appropriate and hoe to use CBF maps as an input here. So far I did as follows for all the subjects, timepoints and hemispheres: bbregister --s Sub01_I --mov Sub01_I_CBF.nii.gz --t2 --reg Sub01_I_reg.dat ; mri_vol2surf --src Sub01_I_CBF.nii.gz --trgsubject fsaverage --out Sub01_I_CBF_to_surf_lh.nii.gz --srcreg Sub01_I_reg.dat --hemi lh mris_fwhm --s fsaverage --hemi lh --fwhm 5 --smooth-only --i Sub01_I_CBF_to_surf_lh.nii.gz --o Sub01_I_CBF_to_surf_lh_smooth.nii.gz; I would really appreciate your help. Thanks, Beata -- Beata Brzeska Medical University of Gdansk, Poland Radiology Department -- Beata Brzeska Zakład Radiologii Uniwersyteckie Centrum Kliniczne w Gdańsku
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
